Definition | Borrelia afzelii PKo plasmid lp60-2, complete sequence. |
---|---|
Accession | NC_008565 |
Length | 59,804 |
Click here to switch to the map view.
The map label for this gene is 117621684
Identifier: 117621684
GI number: 117621684
Start: 37856
End: 38410
Strand: Reverse
Name: 117621684
Synonym: BAPKO_2537
Alternate gene names: NA
Gene position: 38410-37856 (Counterclockwise)
Preceding gene: 117621685
Following gene: 117621683
Centisome position: 64.23
GC content: 23.6
Gene sequence:
>555_bases ATGGAAAGCGTGCTTAAATCTACACAAATAGAAAAAACAAGAATTAAATGTAAAAATAAAAATCGTTTCATAAAGATCGA AAAACAAAATGGTAAAACCATATACCATACAAAAATAATGATGGACATTTACAAACTCGGAATTGATAATAAAAGAAATG AATGTCGTATATCATTGAGAACTTTATTTAATCAAATGAAAGTTGAAGAAGTTCGTTTATATTCTGTAAAAGAAGGAGAT CAATTTCTAGGAATTTATTATGGTTATAGAAAACCAATAAAAAATATTTTTGTAAAATATGAAACAAATGGAATCATAAA ATCATATGGATTATCAAAAGCATACTACATAGAATTTAGATTTAAAAAAGGAAGTGTTTTTTGCTATTTTAAGGGATTGC TTCGTTTGTTAAAAAAAGAAAAATCAAATACACCCTATAATATAGCATGTATTGATATGTTTACAAAATTAGAAAAACAT GTATATGAATTTTATGATAAAGAATATCCAGAAGAAGGAATACTTATAAGATGGATAGAAAAAAACCAAAAATAA
Upstream 100 bases:
>100_bases TATTTGACACTTATTATTATGAATTATTAGAAACGATAAAAAAAGAAAAAATTTCTTAAGCGTAAAAGAATTAAATAAAG ATATTACATAAGGATTAAAA
Downstream 100 bases:
>100_bases TAACCATTGCAAGCCTTAAAGGTGGTGTTGGGAAAAGTACAACCTCAATAATACTTGCAAATTTATTAGCACAGAAGTAT AAAGTACTTTTAATAGATAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 184; Mature: 184
Protein sequence:
>184_residues MESVLKSTQIEKTRIKCKNKNRFIKIEKQNGKTIYHTKIMMDIYKLGIDNKRNECRISLRTLFNQMKVEEVRLYSVKEGD QFLGIYYGYRKPIKNIFVKYETNGIIKSYGLSKAYYIEFRFKKGSVFCYFKGLLRLLKKEKSNTPYNIACIDMFTKLEKH VYEFYDKEYPEEGILIRWIEKNQK
Sequences:
>Translated_184_residues MESVLKSTQIEKTRIKCKNKNRFIKIEKQNGKTIYHTKIMMDIYKLGIDNKRNECRISLRTLFNQMKVEEVRLYSVKEGD QFLGIYYGYRKPIKNIFVKYETNGIIKSYGLSKAYYIEFRFKKGSVFCYFKGLLRLLKKEKSNTPYNIACIDMFTKLEKH VYEFYDKEYPEEGILIRWIEKNQK >Mature_184_residues MESVLKSTQIEKTRIKCKNKNRFIKIEKQNGKTIYHTKIMMDIYKLGIDNKRNECRISLRTLFNQMKVEEVRLYSVKEGD QFLGIYYGYRKPIKNIFVKYETNGIIKSYGLSKAYYIEFRFKKGSVFCYFKGLLRLLKKEKSNTPYNIACIDMFTKLEKH VYEFYDKEYPEEGILIRWIEKNQK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22220; Mature: 22220
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESVLKSTQIEKTRIKCKNKNRFIKIEKQNGKTIYHTKIMMDIYKLGIDNKRNECRISLR CCCHHHHCCCHHHHEEECCCCEEEEEECCCCCEEEEHHHHHHHHHHCCCCCCCHHEEHHH TLFNQMKVEEVRLYSVKEGDQFLGIYYGYRKPIKNIFVKYETNGIIKSYGLSKAYYIEFR HHHHHHCHHHEEEEEECCCCEEEEEEEHHHCCHHHEEEEEECCCEEECCCCCEEEEEEEE FKKGSVFCYFKGLLRLLKKEKSNTPYNIACIDMFTKLEKHVYEFYDKEYPEEGILIRWIE EECCCEEEEHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE KNQK CCCC >Mature Secondary Structure MESVLKSTQIEKTRIKCKNKNRFIKIEKQNGKTIYHTKIMMDIYKLGIDNKRNECRISLR CCCHHHHCCCHHHHEEECCCCEEEEEECCCCCEEEEHHHHHHHHHHCCCCCCCHHEEHHH TLFNQMKVEEVRLYSVKEGDQFLGIYYGYRKPIKNIFVKYETNGIIKSYGLSKAYYIEFR HHHHHHCHHHEEEEEECCCCEEEEEEEHHHCCHHHEEEEEECCCEEECCCCCEEEEEEEE FKKGSVFCYFKGLLRLLKKEKSNTPYNIACIDMFTKLEKHVYEFYDKEYPEEGILIRWIE EECCCEEEEHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE KNQK CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA