| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is lacD [H]
Identifier: 116872221
GI number: 116872221
Start: 830751
End: 831758
Strand: Direct
Name: lacD [H]
Synonym: lwe0801
Alternate gene names: 116872221
Gene position: 830751-831758 (Clockwise)
Preceding gene: 116872220
Following gene: 116872222
Centisome position: 29.52
GC content: 35.22
Gene sequence:
>1008_bases ATGAAAAAAATTAGTATCAATCGATTACAAAAATTAAAGAATACAAGTAATGACAAGGGGATTATTGGTGCGTTAGCAAT TGATCAGCGCGGTGCTTTGAAAAAAATGATTAATAAATATAAAGATTCGACAGATAAAGATATTGAAGATTTCAAGAGAT TGGTTTCAGAAGAATTGACGCCTTATGCAACATCCATTTTGTTAGACCCTGAGTATGGATTACCCGCAGCGAAATCACGT TCTAATAGTGCAGGGTTATTGTTAGCTTATGAAAAAACTGGATATGATGCAACAACCCCTGGCCGTTTACCAGATTCTAT AAACATTTGGTCAGTTAAACGTCTAAAAGAAGCAGGAGCAGACGCATGTAAATTTTTACTTTATTACGATGTCGATGAAA GTAATGAGATTAATGATCAAAAGAAAGCCTATATGGAACGCATTGGCTCAGAATGTGTGGCAGAAGAATTACCGTTCTTT TTGGAATTAATTTCTTATGATGCAACCATTCCTGATGCTAATTCAAAAGAATACGCTAAAGTGAAACCACATAAAGTCAA TGAAATGATGAAAGAATTTTCGAAAGAACGTTATAATGTAGACGTTTTAAAAATGGAAGTGCCTGTAAATATGAATTATG TTGAAGGTTATGGTAAAGAAGTAGTTTATTCTCGGGAAGAGGCTCTAAAATATTTCAAAGAACAAAGTGATGCAACCGAT TTACCATTTATTTTCCTTAGTGCAGGTGTTAGTGCTGAATTATTCCAAGAAACACTGTACTTTGCTAAAGAAGCAGGTTC TACTTTTAATGGTGTATTGTGTGGCCGTGCAACGTGGGCAAATGGCGTAGAATCATTCGTTACAAAAGGAGAAGAAGCGG CACGTCAATGGTTACAAACGCAAGGGCGTAAAAATATTGAAGAATTAAATGCGGTATTAGCAGAAACAGCAAGTTCTTGG CATGCAAAAATTCAAGCAAATGAAACCCAAGGATCTCGTTTTTCTTAA
Upstream 100 bases:
>100_bases TATTCTTTTCAAGTTGCGCGGTCACGTATTTTATCTATTTCTGCAACTATTGAAAAAGAAACTAGTAATATTTTTTTAGA AAAAATGGAGGTTTAATCAA
Downstream 100 bases:
>100_bases AATAATAATCCTAAGAATGTTGGTATTCAGATATTCTTAGGATTAGTTTAAAATAGCTATAAATTCTTATAGAATAGAAT ATTGTAAGCGCAATAAAAAT
Product: tagatose 1,6-diphosphate aldolase
Products: NA
Alternate protein names: D-tagatose-1,6-bisphosphate aldolase 1; Tagatose-bisphosphate aldolase 1 [H]
Number of amino acids: Translated: 335; Mature: 335
Protein sequence:
>335_residues MKKISINRLQKLKNTSNDKGIIGALAIDQRGALKKMINKYKDSTDKDIEDFKRLVSEELTPYATSILLDPEYGLPAAKSR SNSAGLLLAYEKTGYDATTPGRLPDSINIWSVKRLKEAGADACKFLLYYDVDESNEINDQKKAYMERIGSECVAEELPFF LELISYDATIPDANSKEYAKVKPHKVNEMMKEFSKERYNVDVLKMEVPVNMNYVEGYGKEVVYSREEALKYFKEQSDATD LPFIFLSAGVSAELFQETLYFAKEAGSTFNGVLCGRATWANGVESFVTKGEEAARQWLQTQGRKNIEELNAVLAETASSW HAKIQANETQGSRFS
Sequences:
>Translated_335_residues MKKISINRLQKLKNTSNDKGIIGALAIDQRGALKKMINKYKDSTDKDIEDFKRLVSEELTPYATSILLDPEYGLPAAKSR SNSAGLLLAYEKTGYDATTPGRLPDSINIWSVKRLKEAGADACKFLLYYDVDESNEINDQKKAYMERIGSECVAEELPFF LELISYDATIPDANSKEYAKVKPHKVNEMMKEFSKERYNVDVLKMEVPVNMNYVEGYGKEVVYSREEALKYFKEQSDATD LPFIFLSAGVSAELFQETLYFAKEAGSTFNGVLCGRATWANGVESFVTKGEEAARQWLQTQGRKNIEELNAVLAETASSW HAKIQANETQGSRFS >Mature_335_residues MKKISINRLQKLKNTSNDKGIIGALAIDQRGALKKMINKYKDSTDKDIEDFKRLVSEELTPYATSILLDPEYGLPAAKSR SNSAGLLLAYEKTGYDATTPGRLPDSINIWSVKRLKEAGADACKFLLYYDVDESNEINDQKKAYMERIGSECVAEELPFF LELISYDATIPDANSKEYAKVKPHKVNEMMKEFSKERYNVDVLKMEVPVNMNYVEGYGKEVVYSREEALKYFKEQSDATD LPFIFLSAGVSAELFQETLYFAKEAGSTFNGVLCGRATWANGVESFVTKGEEAARQWLQTQGRKNIEELNAVLAETASSW HAKIQANETQGSRFS
Specific function: Unknown
COG id: COG3684
COG function: function code G; Tagatose-1,6-bisphosphate aldolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldolase lacD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR002915 - InterPro: IPR005927 [H]
Pfam domain/function: PF01791 DeoC [H]
EC number: =4.1.2.40 [H]
Molecular weight: Translated: 37703; Mature: 37703
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKISINRLQKLKNTSNDKGIIGALAIDQRGALKKMINKYKDSTDKDIEDFKRLVSEELT CCCCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC PYATSILLDPEYGLPAAKSRSNSAGLLLAYEKTGYDATTPGRLPDSINIWSVKRLKEAGA CHHHEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCC DACKFLLYYDVDESNEINDQKKAYMERIGSECVAEELPFFLELISYDATIPDANSKEYAK CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC VKPHKVNEMMKEFSKERYNVDVLKMEVPVNMNYVEGYGKEVVYSREEALKYFKEQSDATD CCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCC LPFIFLSAGVSAELFQETLYFAKEAGSTFNGVLCGRATWANGVESFVTKGEEAARQWLQT CCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHCCHHHHHHHHHH QGRKNIEELNAVLAETASSWHAKIQANETQGSRFS CCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCC >Mature Secondary Structure MKKISINRLQKLKNTSNDKGIIGALAIDQRGALKKMINKYKDSTDKDIEDFKRLVSEELT CCCCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC PYATSILLDPEYGLPAAKSRSNSAGLLLAYEKTGYDATTPGRLPDSINIWSVKRLKEAGA CHHHEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCC DACKFLLYYDVDESNEINDQKKAYMERIGSECVAEELPFFLELISYDATIPDANSKEYAK CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC VKPHKVNEMMKEFSKERYNVDVLKMEVPVNMNYVEGYGKEVVYSREEALKYFKEQSDATD CCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCC LPFIFLSAGVSAELFQETLYFAKEAGSTFNGVLCGRATWANGVESFVTKGEEAARQWLQT CCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHCCHHHHHHHHHH QGRKNIEELNAVLAETASSWHAKIQANETQGSRFS CCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12663927 [H]