Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
---|---|
Accession | NC_008542 |
Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116689923
Identifier: 116689923
GI number: 116689923
Start: 2106684
End: 2108825
Strand: Direct
Name: 116689923
Synonym: Bcen2424_1902
Alternate gene names: NA
Gene position: 2106684-2108825 (Clockwise)
Preceding gene: 116689917
Following gene: 116689929
Centisome position: 60.47
GC content: 69.28
Gene sequence:
>2142_bases ATGCATCGCCTTGCGAAGTCGCTGTGTCTCGGGCTCGTCTGCGCCGGCCTGCTGTCGGCCTGCAACGACGACGACGTCAA GTCCACCACCCCGCCATCGAACACCGCCGCGTTGTCGTTCCGCATGGACACCGGCGGCCAGATCAACGCGTTCTACCGGC AGGACAAGGTCGCCGCGCACCTGCTGGTGCGCTCGTCGACGAAGCCGCGCCTGCTGGTGGTGTTCCCCGCCGGCAACAGC GGCACCGGGCTGTGGTTCGACGACACCGCGCAGCCGGTGAACTGGACCCTCGACACGCCGCCGTCGGCGCTGTCGGCGCC GGACACGCACGGCCGCCCGCTGTACGGCATCGGCGCCGACGTGTCGGTCGACACCGGTACGCTGACGATCCGGCAGGGCG TGCTCAGCAACGTGCGCTTCCTGCGCGACTTCAACGGCGGCGCGACGATCCCGCAGCAGATCCTCACCGCGCCGACGGTC CAGGGCAGCACCGCACAATGGCAACGCGACCGGCTCGACGGCGCGCCCGGCTATGCGCTGCGCATCACGCTGCGCGACGG CGGCAGCATCGCGCCGGCAGCGGGCGGCAAGCTCGTGCTCAACGCACCCGCGGGTTCGCACACGCTGAAGCTGCACATCG ATGCGCTATCGGGCGAGACGCCGCTGTCGCCGATCACGCACGCCGACCTGTTCGCACCGTCGGTAAATCCCGACCCGGTC AGCCAGAACGTGCTCGAATTCCTGAGCTTCAACGACAAGCTGCTGGCCGGCTCGTGGCAGTACGACACGTACTTCGGCCG CGACACGCTGATCTCGGTCCGCATGCTGATGCCCGTGCTCGAACCCGCGGCGATCGAGGCCGGCCTGTCGTCGGTGCTGA GCCGCCTGTCGGCCGACGGCAAGGTCGCGCACGAGGAAGGCATCGGCGAATTCGCGCTGGTCGACAACCAGAAGAACGGG CGGCCGAACGATGCGACACCGACCTACGACTACAAGATGATCGACAGCGACTACCTGCTCGCACCGATCGCGGCCGCGTG GCTGATCGACGATGCGCGCGGCCAGGCCCGCGCCGCCGCGTATCTGGCGCAGCGCGGCAGCGACGGGCAGACCAACGGCA GCCGCCTCGTCGTCAATCTGCTGCACGTCGCGACGACCGCGCAACCGTTCGCGCAGCAGCCGTCGGTCGCGAACCTGATC CACCTGCGGCCCGGCGAAATCGTCGGCAACTGGCGCGACAGCACCGACGGTCTCGGCGGCGGCGTGTACCCGTACGACGT GAACGCGGTGCTCGTGCCGGCCGCGCTGCGCGCGGCGAACGCGTTCCTCGCCCGCGGCCTGCTCGATCCGTACCTCGATG CCCAGCAACGCGCGACGCTCGCCAACACGGCGAACCAGGCGGTCACGTGGGAAACGCAGGCGCCGCCGCTGTTCCAGGTC AGCGTGCCGGCCGCGCAGGCGGCCACCGACGTGTCGGCCTATGCGCCGTCCGCTGGCGTGCCGGCCGGCGCCGCGCCCAA CGCACCGCTGGCCTTCTACGCGCTGTCGCTCGACCAGCAGGGCAACCCGATTCCGGTGATGAATTCGGACGGCGGTTTCG CGCTGCTGTTCGGTACGCCGCCGGACGATCAGCTCCAGCGGATCGTCAGTGACGTCACGCGGCCGTTCCCGACCGGGCTC GTGACGGATGTCGGGATGCTGATCGCGAACCCCGCGTATGCGAGCTCGTCGCTGTGGCCGAAGTTCACGAGCTCCGCGTA TCACGGCACGGTGATCTGGTCGTGGCAGCAGGCGATGTGGGTGGCCGGGCTCGATCGCCAGCTGGCGCGCCAGGACCTGT CGGCTACGACACGCACGCTGCTCACGCAGGCGCGGCAGACGATCTGGCAGGTGATCTCGAACGGGCGCGACATGCGCACG TCGGAAATGTGGACGTGGTCCTACGTGAACGGCAAGTACCAGACCGACGCATTCGGCACGCGCAGTGCGGATGCGACCGA AGCCAACGCGGCGCAGCTCTGGAGTACGACGTATCTCGCGATCCGCGATCCGCAGCAGCGTGCGGGCAAGTACTGGTGGC AGGCGTCGCAGTCGATGCAGGACGACCAGTCGAAGCAGGCGACGGCGGTAGCGTCGCGCTAG
Upstream 100 bases:
>100_bases TATTCGGCAGAGTGAATACAAAGCGAGACCAAACGGACAAAAGATCCGCCGCTTAGAACATCCAGATAAAAAATCGCCAG TCATCAGGAGGGACATCAAC
Downstream 100 bases:
>100_bases CGCGTCGCCGCGCGTGAGCAGGCCGACACCGACACCGGCCCGCAAAAGCCCGGCGGCACTCCCGCCGCCGGGGCTTTCGG TGCAGATCCGGTTAGCGCGA
Product: putative lipoprotein
Products: NA
Alternate protein names: Type V Secretory Pathway Adhesin AidA; Glycogen Debranching
Number of amino acids: Translated: 713; Mature: 713
Protein sequence:
>713_residues MHRLAKSLCLGLVCAGLLSACNDDDVKSTTPPSNTAALSFRMDTGGQINAFYRQDKVAAHLLVRSSTKPRLLVVFPAGNS GTGLWFDDTAQPVNWTLDTPPSALSAPDTHGRPLYGIGADVSVDTGTLTIRQGVLSNVRFLRDFNGGATIPQQILTAPTV QGSTAQWQRDRLDGAPGYALRITLRDGGSIAPAAGGKLVLNAPAGSHTLKLHIDALSGETPLSPITHADLFAPSVNPDPV SQNVLEFLSFNDKLLAGSWQYDTYFGRDTLISVRMLMPVLEPAAIEAGLSSVLSRLSADGKVAHEEGIGEFALVDNQKNG RPNDATPTYDYKMIDSDYLLAPIAAAWLIDDARGQARAAAYLAQRGSDGQTNGSRLVVNLLHVATTAQPFAQQPSVANLI HLRPGEIVGNWRDSTDGLGGGVYPYDVNAVLVPAALRAANAFLARGLLDPYLDAQQRATLANTANQAVTWETQAPPLFQV SVPAAQAATDVSAYAPSAGVPAGAAPNAPLAFYALSLDQQGNPIPVMNSDGGFALLFGTPPDDQLQRIVSDVTRPFPTGL VTDVGMLIANPAYASSSLWPKFTSSAYHGTVIWSWQQAMWVAGLDRQLARQDLSATTRTLLTQARQTIWQVISNGRDMRT SEMWTWSYVNGKYQTDAFGTRSADATEANAAQLWSTTYLAIRDPQQRAGKYWWQASQSMQDDQSKQATAVASR
Sequences:
>Translated_713_residues MHRLAKSLCLGLVCAGLLSACNDDDVKSTTPPSNTAALSFRMDTGGQINAFYRQDKVAAHLLVRSSTKPRLLVVFPAGNS GTGLWFDDTAQPVNWTLDTPPSALSAPDTHGRPLYGIGADVSVDTGTLTIRQGVLSNVRFLRDFNGGATIPQQILTAPTV QGSTAQWQRDRLDGAPGYALRITLRDGGSIAPAAGGKLVLNAPAGSHTLKLHIDALSGETPLSPITHADLFAPSVNPDPV SQNVLEFLSFNDKLLAGSWQYDTYFGRDTLISVRMLMPVLEPAAIEAGLSSVLSRLSADGKVAHEEGIGEFALVDNQKNG RPNDATPTYDYKMIDSDYLLAPIAAAWLIDDARGQARAAAYLAQRGSDGQTNGSRLVVNLLHVATTAQPFAQQPSVANLI HLRPGEIVGNWRDSTDGLGGGVYPYDVNAVLVPAALRAANAFLARGLLDPYLDAQQRATLANTANQAVTWETQAPPLFQV SVPAAQAATDVSAYAPSAGVPAGAAPNAPLAFYALSLDQQGNPIPVMNSDGGFALLFGTPPDDQLQRIVSDVTRPFPTGL VTDVGMLIANPAYASSSLWPKFTSSAYHGTVIWSWQQAMWVAGLDRQLARQDLSATTRTLLTQARQTIWQVISNGRDMRT SEMWTWSYVNGKYQTDAFGTRSADATEANAAQLWSTTYLAIRDPQQRAGKYWWQASQSMQDDQSKQATAVASR >Mature_713_residues MHRLAKSLCLGLVCAGLLSACNDDDVKSTTPPSNTAALSFRMDTGGQINAFYRQDKVAAHLLVRSSTKPRLLVVFPAGNS GTGLWFDDTAQPVNWTLDTPPSALSAPDTHGRPLYGIGADVSVDTGTLTIRQGVLSNVRFLRDFNGGATIPQQILTAPTV QGSTAQWQRDRLDGAPGYALRITLRDGGSIAPAAGGKLVLNAPAGSHTLKLHIDALSGETPLSPITHADLFAPSVNPDPV SQNVLEFLSFNDKLLAGSWQYDTYFGRDTLISVRMLMPVLEPAAIEAGLSSVLSRLSADGKVAHEEGIGEFALVDNQKNG RPNDATPTYDYKMIDSDYLLAPIAAAWLIDDARGQARAAAYLAQRGSDGQTNGSRLVVNLLHVATTAQPFAQQPSVANLI HLRPGEIVGNWRDSTDGLGGGVYPYDVNAVLVPAALRAANAFLARGLLDPYLDAQQRATLANTANQAVTWETQAPPLFQV SVPAAQAATDVSAYAPSAGVPAGAAPNAPLAFYALSLDQQGNPIPVMNSDGGFALLFGTPPDDQLQRIVSDVTRPFPTGL VTDVGMLIANPAYASSSLWPKFTSSAYHGTVIWSWQQAMWVAGLDRQLARQDLSATTRTLLTQARQTIWQVISNGRDMRT SEMWTWSYVNGKYQTDAFGTRSADATEANAAQLWSTTYLAIRDPQQRAGKYWWQASQSMQDDQSKQATAVASR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 76319; Mature: 76319
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHRLAKSLCLGLVCAGLLSACNDDDVKSTTPPSNTAALSFRMDTGGQINAFYRQDKVAAH CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEHHHHHHHHH LLVRSSTKPRLLVVFPAGNSGTGLWFDDTAQPVNWTLDTPPSALSAPDTHGRPLYGIGAD HHEECCCCCEEEEEEECCCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCC VSVDTGTLTIRQGVLSNVRFLRDFNGGATIPQQILTAPTVQGSTAQWQRDRLDGAPGYAL CEECCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHCCCCCCEEE RITLRDGGSIAPAAGGKLVLNAPAGSHTLKLHIDALSGETPLSPITHADLFAPSVNPDPV EEEEECCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCC SQNVLEFLSFNDKLLAGSWQYDTYFGRDTLISVRMLMPVLEPAAIEAGLSSVLSRLSADG HHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCC KVAHEEGIGEFALVDNQKNGRPNDATPTYDYKMIDSDYLLAPIAAAWLIDDARGQARAAA CCHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHEECCCCHHHHHH YLAQRGSDGQTNGSRLVVNLLHVATTAQPFAQQPSVANLIHLRPGEIVGNWRDSTDGLGG HHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCHHEEEEECCCCEEECCCCCCCCCCC GVYPYDVNAVLVPAALRAANAFLARGLLDPYLDAQQRATLANTANQAVTWETQAPPLFQV CCCEEECCEEEEHHHHHHHHHHHHHHHHCHHHCHHHHHHHHHCCCCEEEEECCCCCEEEE SVPAAQAATDVSAYAPSAGVPAGAAPNAPLAFYALSLDQQGNPIPVMNSDGGFALLFGTP ECCCHHHHCCHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCEEEEECCC PDDQLQRIVSDVTRPFPTGLVTDVGMLIANPAYASSSLWPKFTSSAYHGTVIWSWQQAMW CHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHH VAGLDRQLARQDLSATTRTLLTQARQTIWQVISNGRDMRTSEMWTWSYVNGKYQTDAFGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEECCCCCC RSADATEANAAQLWSTTYLAIRDPQQRAGKYWWQASQSMQDDQSKQATAVASR CCCCCCCCCHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MHRLAKSLCLGLVCAGLLSACNDDDVKSTTPPSNTAALSFRMDTGGQINAFYRQDKVAAH CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEHHHHHHHHH LLVRSSTKPRLLVVFPAGNSGTGLWFDDTAQPVNWTLDTPPSALSAPDTHGRPLYGIGAD HHEECCCCCEEEEEEECCCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCC VSVDTGTLTIRQGVLSNVRFLRDFNGGATIPQQILTAPTVQGSTAQWQRDRLDGAPGYAL CEECCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHCCCCCCEEE RITLRDGGSIAPAAGGKLVLNAPAGSHTLKLHIDALSGETPLSPITHADLFAPSVNPDPV EEEEECCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCC SQNVLEFLSFNDKLLAGSWQYDTYFGRDTLISVRMLMPVLEPAAIEAGLSSVLSRLSADG HHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCC KVAHEEGIGEFALVDNQKNGRPNDATPTYDYKMIDSDYLLAPIAAAWLIDDARGQARAAA CCHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHEECCCCHHHHHH YLAQRGSDGQTNGSRLVVNLLHVATTAQPFAQQPSVANLIHLRPGEIVGNWRDSTDGLGG HHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCHHEEEEECCCCEEECCCCCCCCCCC GVYPYDVNAVLVPAALRAANAFLARGLLDPYLDAQQRATLANTANQAVTWETQAPPLFQV CCCEEECCEEEEHHHHHHHHHHHHHHHHCHHHCHHHHHHHHHCCCCEEEEECCCCCEEEE SVPAAQAATDVSAYAPSAGVPAGAAPNAPLAFYALSLDQQGNPIPVMNSDGGFALLFGTP ECCCHHHHCCHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCEEEEECCC PDDQLQRIVSDVTRPFPTGLVTDVGMLIANPAYASSSLWPKFTSSAYHGTVIWSWQQAMW CHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHH VAGLDRQLARQDLSATTRTLLTQARQTIWQVISNGRDMRTSEMWTWSYVNGKYQTDAFGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEECCCCCC RSADATEANAAQLWSTTYLAIRDPQQRAGKYWWQASQSMQDDQSKQATAVASR CCCCCCCCCHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA