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The map label for this gene is ydiU [C]

Identifier: 116689929

GI number: 116689929

Start: 2116593

End: 2118161

Strand: Direct

Name: ydiU [C]

Synonym: Bcen2424_1908

Alternate gene names: 116689929

Gene position: 2116593-2118161 (Clockwise)

Preceding gene: 116689923

Following gene: 116689930

Centisome position: 60.75

GC content: 68.83

Gene sequence:

>1569_bases
ATGTCGTTTTCCCGAAGCGCAGCCGATGCGGCTGACACCCTGCCCGACCTCGCCGCGACGCTCGGCGCGCCCGCCGAACG
CGCGTTCGTCACGCTCGGCGACGCGTTTCATACGCGGCTGCCGGCCGCGCCGCTCGCCGCGCCGTACGTCGTCGGCTTTT
CCGACGACGTCGCGCAACTGCTCGACCTGCCGCCCTCGATCGCCGCGCAGCCGGGTTTCGCCGAGCTGTTCGCCGGCAAC
CCGACGCGCGACTGGCCCGCGCACGCGATGCCGTACGCGTCGGTCTACTCCGGCCATCAGTTCGGCGTGTGGGCCGGCCA
GCTCGGCGACGGCCGCGCGCTGACGATCGGCGAACTGCCCGGCACCGACGGCCGGCGCTACGAACTGCAGCTCAAGGGCG
GCGGCCGCACGCCGTATTCGCGCATGGGCGACGGCCGCGCGGTGCTGCGCTCGTCGATCCGCGAATTCCTGTGCTCGGAA
GCGATGCATCACCTCGGCATCCCGACCACGCGCGCGCTGACGGTGATCGGCTCCGACCAGCCGGTGGTGCGCGAGGAGAT
CGAGACGGCGGCCGTCGTCACCCGCGTGTCGGAAAGCTTCGTGCGCTTCGGCCACTTCGAGCACTTCTTTTCGAACGATC
GCCCCGACCTGCTGCGCCAGCTTGCCGACCACGTGATCGACCGCTTCTATCCGGCCTGCCGCGACGCGGACGATCCGTAC
CTCGCGCTGCTCGAAGCGGCGACGTTGCGCACGGCCGACCTCGTCGCGCAATGGCAGGCCGTCGGCTTCTGCCACGGCGT
GATGAACACCGACAACATGTCGATTCTCGGCGTGACGATCGACTACGGTCCGTTCGGCTTCGTCGATGCGTTCGATGCGA
ACCACATCTGCAACCACTCGGACACCAGCGGCCGCTATGCGTACCGGATGCAGCCGCGCATCGCGCACTGGAACTGCTAC
TGCCTCGCGCAGGCGCTGCTGCCGCTGATCGGGCTGCAGCACGGCATCGCCGACGACGATGCGCGCGCCGAGCGCGCGGT
GGACGACGCACAGGCCGTGCTCGCGAAGTTTCCGGAGCGCTTCGGCCCCGCGCTCGAACGCGCGATGCGCGCGAAACTCG
GCCTCGAACTCGAACGCGAGGGCGACGCCGAACTCGCGAACAAGCTGCTCGAGACGATGCATGCGAGCCACGCGGATTTC
ACGCTGACGTTCCGCCGGCTCGCGCAGATCTCGAAGCACGACGCGAGCCGCGACGCACCCGTGCGCGACCTCTTCATCGA
CCGTGAAGCATTCGACGCCTGGGCGAACCTCTACCGCGCGCGGCTGTCCGAGGAAACGCGCGACGACGCGGCGCGCGCGG
TTGCAATGAACCGCGCGAACCCCAAATACGTGCTTCGCAACCATCTGGCCGAAGTCGCGATCCGGCGCGCGAAGGAAAAG
GATTTTTCGGAAGTCGAGCGGCTCGCGCAGATCCTGCGCCGTCCGTTCGACGAACAACCGGAGCATGAAGCGTACGCGGC
GTTGCCGCCCGACTGGGCCGGCTCGCTCGAAGTGAGCTGCTCGTCCTGA

Upstream 100 bases:

>100_bases
CCGTCAGCGGCCCCGGACGGGCGTGGCGCACGGTGCGCGGGCCGCCATGCGGGCGGCGCGGCGCCGCCTTACAATATCGG
CTTACCCAGAGGCGCTCAAT

Downstream 100 bases:

>100_bases
GCCCGCAACCCGCGCATCTCGACCGACCGATCAGGAGAACCCCCATGTCCCACGATTCCGACGACAAGACCTTCCCGTAC
CAGAAGGACGACGCCGAACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 522; Mature: 521

Protein sequence:

>522_residues
MSFSRSAADAADTLPDLAATLGAPAERAFVTLGDAFHTRLPAAPLAAPYVVGFSDDVAQLLDLPPSIAAQPGFAELFAGN
PTRDWPAHAMPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGGGRTPYSRMGDGRAVLRSSIREFLCSE
AMHHLGIPTTRALTVIGSDQPVVREEIETAAVVTRVSESFVRFGHFEHFFSNDRPDLLRQLADHVIDRFYPACRDADDPY
LALLEAATLRTADLVAQWQAVGFCHGVMNTDNMSILGVTIDYGPFGFVDAFDANHICNHSDTSGRYAYRMQPRIAHWNCY
CLAQALLPLIGLQHGIADDDARAERAVDDAQAVLAKFPERFGPALERAMRAKLGLELEREGDAELANKLLETMHASHADF
TLTFRRLAQISKHDASRDAPVRDLFIDREAFDAWANLYRARLSEETRDDAARAVAMNRANPKYVLRNHLAEVAIRRAKEK
DFSEVERLAQILRRPFDEQPEHEAYAALPPDWAGSLEVSCSS

Sequences:

>Translated_522_residues
MSFSRSAADAADTLPDLAATLGAPAERAFVTLGDAFHTRLPAAPLAAPYVVGFSDDVAQLLDLPPSIAAQPGFAELFAGN
PTRDWPAHAMPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGGGRTPYSRMGDGRAVLRSSIREFLCSE
AMHHLGIPTTRALTVIGSDQPVVREEIETAAVVTRVSESFVRFGHFEHFFSNDRPDLLRQLADHVIDRFYPACRDADDPY
LALLEAATLRTADLVAQWQAVGFCHGVMNTDNMSILGVTIDYGPFGFVDAFDANHICNHSDTSGRYAYRMQPRIAHWNCY
CLAQALLPLIGLQHGIADDDARAERAVDDAQAVLAKFPERFGPALERAMRAKLGLELEREGDAELANKLLETMHASHADF
TLTFRRLAQISKHDASRDAPVRDLFIDREAFDAWANLYRARLSEETRDDAARAVAMNRANPKYVLRNHLAEVAIRRAKEK
DFSEVERLAQILRRPFDEQPEHEAYAALPPDWAGSLEVSCSS
>Mature_521_residues
SFSRSAADAADTLPDLAATLGAPAERAFVTLGDAFHTRLPAAPLAAPYVVGFSDDVAQLLDLPPSIAAQPGFAELFAGNP
TRDWPAHAMPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGGGRTPYSRMGDGRAVLRSSIREFLCSEA
MHHLGIPTTRALTVIGSDQPVVREEIETAAVVTRVSESFVRFGHFEHFFSNDRPDLLRQLADHVIDRFYPACRDADDPYL
ALLEAATLRTADLVAQWQAVGFCHGVMNTDNMSILGVTIDYGPFGFVDAFDANHICNHSDTSGRYAYRMQPRIAHWNCYC
LAQALLPLIGLQHGIADDDARAERAVDDAQAVLAKFPERFGPALERAMRAKLGLELEREGDAELANKLLETMHASHADFT
LTFRRLAQISKHDASRDAPVRDLFIDREAFDAWANLYRARLSEETRDDAARAVAMNRANPKYVLRNHLAEVAIRRAKEKD
FSEVERLAQILRRPFDEQPEHEAYAALPPDWAGSLEVSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=486, Percent_Identity=42.3868312757202, Blast_Score=316, Evalue=3e-86,
Organism=Escherichia coli, GI1787999, Length=491, Percent_Identity=46.0285132382892, Blast_Score=417, Evalue=1e-117,
Organism=Saccharomyces cerevisiae, GI6325034, Length=352, Percent_Identity=36.3636363636364, Blast_Score=198, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 57617; Mature: 57486

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSRSAADAADTLPDLAATLGAPAERAFVTLGDAFHTRLPAAPLAAPYVVGFSDDVAQL
CCCCCCHHHHHHHHHHHHHHHCCCCHHHEEEECHHHHHCCCCCCCCCCEEECCCHHHHHH
LDLPPSIAAQPGFAELFAGNPTRDWPAHAMPYASVYSGHQFGVWAGQLGDGRALTIGELP
HCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCEEEECCCC
GTDGRRYELQLKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALTVIGSDQ
CCCCCEEEEEECCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCC
PVVREEIETAAVVTRVSESFVRFGHFEHFFSNDRPDLLRQLADHVIDRFYPACRDADDPY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
LALLEAATLRTADLVAQWQAVGFCHGVMNTDNMSILGVTIDYGPFGFVDAFDANHICNHS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEECCCCCCCCCCC
DTSGRYAYRMQPRIAHWNCYCLAQALLPLIGLQHGIADDDARAERAVDDAQAVLAKFPER
CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
FGPALERAMRAKLGLELEREGDAELANKLLETMHASHADFTLTFRRLAQISKHDASRDAP
HCHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
VRDLFIDREAFDAWANLYRARLSEETRDDAARAVAMNRANPKYVLRNHLAEVAIRRAKEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
DFSEVERLAQILRRPFDEQPEHEAYAALPPDWAGSLEVSCSS
CHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEEEECC
>Mature Secondary Structure 
SFSRSAADAADTLPDLAATLGAPAERAFVTLGDAFHTRLPAAPLAAPYVVGFSDDVAQL
CCCCCHHHHHHHHHHHHHHHCCCCHHHEEEECHHHHHCCCCCCCCCCEEECCCHHHHHH
LDLPPSIAAQPGFAELFAGNPTRDWPAHAMPYASVYSGHQFGVWAGQLGDGRALTIGELP
HCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCEEEECCCC
GTDGRRYELQLKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALTVIGSDQ
CCCCCEEEEEECCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCC
PVVREEIETAAVVTRVSESFVRFGHFEHFFSNDRPDLLRQLADHVIDRFYPACRDADDPY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
LALLEAATLRTADLVAQWQAVGFCHGVMNTDNMSILGVTIDYGPFGFVDAFDANHICNHS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEECCCCCCCCCCC
DTSGRYAYRMQPRIAHWNCYCLAQALLPLIGLQHGIADDDARAERAVDDAQAVLAKFPER
CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
FGPALERAMRAKLGLELEREGDAELANKLLETMHASHADFTLTFRRLAQISKHDASRDAP
HCHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
VRDLFIDREAFDAWANLYRARLSEETRDDAARAVAMNRANPKYVLRNHLAEVAIRRAKEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
DFSEVERLAQILRRPFDEQPEHEAYAALPPDWAGSLEVSCSS
CHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA