Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
---|---|
Accession | NC_008542 |
Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is yidB [H]
Identifier: 116689867
GI number: 116689867
Start: 2050426
End: 2050857
Strand: Direct
Name: yidB [H]
Synonym: Bcen2424_1846
Alternate gene names: 116689867
Gene position: 2050426-2050857 (Clockwise)
Preceding gene: 116689866
Following gene: 116689870
Centisome position: 58.85
GC content: 67.36
Gene sequence:
>432_bases ATGGGTCTCCTCGACATCGTTGGCGGTCTGATCGGCGGCCAGGCCGGCGGCAACTCGCAAAGCGCGCTGATCACGACCGC GCTCGAATTCATCAACAACCAGCCGGGCGGCCTGAACGGGCTGATCGAGAAGTTCAAGGCCGGCGGCGCCGGCGAGATCA TCGGTTCGTGGGTCGGCACCGGCGAAAACCAGCCGATCTCGCCGGACACGCTGCAGAACGTGCTCGGCTCGGACGTCGTC GGCTCGCTCGCGAGCAAGGTCGGCATCGATCCGTCGCAGGCGTCGTCGATCCTCGCGCAGGTGCTGCCGCACGTCGTCAA CGGCGCGACGCCGAACGGTGAAGTGCCGGCCAGCGGCCAGGTGGACACGTCGAACGTGCTCGGCACGCTCACGCAGCTTG CCGGCATGTTCGGCGGCAACAAGCAGGCGTAA
Upstream 100 bases:
>100_bases TCGGGCGCCTGATGTGCGCCGCGCGCGCGACGGCGTGCGCGCGGCATTCGTTCAACGGGCGCCGTCGTCACGGCGCCCTT TTCAGTGAAGGTGAAGAACC
Downstream 100 bases:
>100_bases GCCCGCCGCGCAGCGGCCGGCATCCGGCATAGCGGTTTCGGCCGCTCCATATGCAAACACCCCGCCGAGGCGGGGTGTTT GTTTTTGCGCCCGGTGCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 143; Mature: 142
Protein sequence:
>143_residues MGLLDIVGGLIGGQAGGNSQSALITTALEFINNQPGGLNGLIEKFKAGGAGEIIGSWVGTGENQPISPDTLQNVLGSDVV GSLASKVGIDPSQASSILAQVLPHVVNGATPNGEVPASGQVDTSNVLGTLTQLAGMFGGNKQA
Sequences:
>Translated_143_residues MGLLDIVGGLIGGQAGGNSQSALITTALEFINNQPGGLNGLIEKFKAGGAGEIIGSWVGTGENQPISPDTLQNVLGSDVV GSLASKVGIDPSQASSILAQVLPHVVNGATPNGEVPASGQVDTSNVLGTLTQLAGMFGGNKQA >Mature_142_residues GLLDIVGGLIGGQAGGNSQSALITTALEFINNQPGGLNGLIEKFKAGGAGEIIGSWVGTGENQPISPDTLQNVLGSDVVG SLASKVGIDPSQASSILAQVLPHVVNGATPNGEVPASGQVDTSNVLGTLTQLAGMFGGNKQA
Specific function: Unknown
COG id: COG3753
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082321, Length=117, Percent_Identity=37.6068376068376, Blast_Score=76, Evalue=8e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009282 [H]
Pfam domain/function: PF06078 DUF937 [H]
EC number: NA
Molecular weight: Translated: 14090; Mature: 13959
Theoretical pI: Translated: 4.05; Mature: 4.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLLDIVGGLIGGQAGGNSQSALITTALEFINNQPGGLNGLIEKFKAGGAGEIIGSWVGT CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHCC GENQPISPDTLQNVLGSDVVGSLASKVGIDPSQASSILAQVLPHVVNGATPNGEVPASGQ CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC VDTSNVLGTLTQLAGMFGGNKQA CCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure GLLDIVGGLIGGQAGGNSQSALITTALEFINNQPGGLNGLIEKFKAGGAGEIIGSWVGT CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHCC GENQPISPDTLQNVLGSDVVGSLASKVGIDPSQASSILAQVLPHVVNGATPNGEVPASGQ CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC VDTSNVLGTLTQLAGMFGGNKQA CCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3029692; 7686882; 9278503 [H]