Click here to switch to the map view.

The map label for this gene is rbcR [H]

Identifier: 116689756

GI number: 116689756

Start: 1926668

End: 1927561

Strand: Reverse

Name: rbcR [H]

Synonym: Bcen2424_1735

Alternate gene names: 116689756

Gene position: 1927561-1926668 (Counterclockwise)

Preceding gene: 116689759

Following gene: 116689755

Centisome position: 55.33

GC content: 72.48

Gene sequence:

>894_bases
ATGACCCCGGATCAACTGATAACGTTCGCCGCCGTCGCCGAGCATCTGAACATCAGCCGCGCCGCCGTGGCGCTGCATCT
GTCGCAGCCGGCCGTGTCGGGCCAGTTGCGGCTGCTGCAGGACGAGTTCGGCGAGCCGCTGTACCAGCGCGACGGCCGCG
GCATCCGCCTGACGCCGGTCGGCGAACAGCTCGCGCAATACGCGAAGGCGCAGCGCGACACGTTCGCGCAGGCGCGTGCG
TTTCGCGACGCGGTGCGCGGGCTGGAAGCCGGCACGCTGCGCATCGGCGCGAGCACGACGCCCGCGAGCTACCTGCTGCC
GTACCTGATCGCGGCGTTCCAGCCGCACGCGCCGCGCGTGTCGATCCAGACGATGAGCGGCAATACGGCCGACGTGGTCG
CGGCACTGCCGTCGCTCGACATCGCGCTGATCGAAGGGCCGCCCGGCGAGACGCTGCCGCCGGGCACGGCCGTGCACGCG
TGGCACGAGGACGAGATCGTCGCGATCGTGCCGGCCGGCCATCCGCTCGCGGCGCCCGGCTACGACGTGGGCGTGACGCT
CGACGCGCTGGCCGCGCATCCGCTCGTGCTGCGCGAGGCGGGTTCCGCGGTGCGGCAACTCGTCGAACGCGCGTTCGCGC
ATGGCGGCGCGCCGATGCGTGTCGCGTTCGAGATCGCGGGGGTCGAGGCGGTGAAGGAGGCCGTGCGCGCGGGGATGGGC
ATCGGGTTCGTGTCCGCGATGTCGCTGCGTCACGAGGATGCGGCGCTCGTGCCGCGCTCGCTGGCGCCCGCGCCGCTCAC
GCGGCATTTCTCGATCCTCGTGCCGCATGGCGGCGCGCCGTCGCGGGTCGCCGCGCAATTCCTCGAAATGAGTCTCGCGC
AGGACCTCGCATAG

Upstream 100 bases:

>100_bases
ATGGAGCGTGTGGCGATGGTGTAATCCTAATTTCGTTATATCGATATGAAAAATTGTGATTTGTGACGTAAACTATCCGG
AAAGCCGATAATTCATCCCC

Downstream 100 bases:

>100_bases
GCGCCGACACCGTGCCGGGAACGCGCGTTGCGCGCTGGCGGACGCGTATTCACGGGACAACCGAGCCTTAGGGATTTCCT
CTATGGCGTGGGTCCGAAGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MTPDQLITFAAVAEHLNISRAAVALHLSQPAVSGQLRLLQDEFGEPLYQRDGRGIRLTPVGEQLAQYAKAQRDTFAQARA
FRDAVRGLEAGTLRIGASTTPASYLLPYLIAAFQPHAPRVSIQTMSGNTADVVAALPSLDIALIEGPPGETLPPGTAVHA
WHEDEIVAIVPAGHPLAAPGYDVGVTLDALAAHPLVLREAGSAVRQLVERAFAHGGAPMRVAFEIAGVEAVKEAVRAGMG
IGFVSAMSLRHEDAALVPRSLAPAPLTRHFSILVPHGGAPSRVAAQFLEMSLAQDLA

Sequences:

>Translated_297_residues
MTPDQLITFAAVAEHLNISRAAVALHLSQPAVSGQLRLLQDEFGEPLYQRDGRGIRLTPVGEQLAQYAKAQRDTFAQARA
FRDAVRGLEAGTLRIGASTTPASYLLPYLIAAFQPHAPRVSIQTMSGNTADVVAALPSLDIALIEGPPGETLPPGTAVHA
WHEDEIVAIVPAGHPLAAPGYDVGVTLDALAAHPLVLREAGSAVRQLVERAFAHGGAPMRVAFEIAGVEAVKEAVRAGMG
IGFVSAMSLRHEDAALVPRSLAPAPLTRHFSILVPHGGAPSRVAAQFLEMSLAQDLA
>Mature_296_residues
TPDQLITFAAVAEHLNISRAAVALHLSQPAVSGQLRLLQDEFGEPLYQRDGRGIRLTPVGEQLAQYAKAQRDTFAQARAF
RDAVRGLEAGTLRIGASTTPASYLLPYLIAAFQPHAPRVSIQTMSGNTADVVAALPSLDIALIEGPPGETLPPGTAVHAW
HEDEIVAIVPAGHPLAAPGYDVGVTLDALAAHPLVLREAGSAVRQLVERAFAHGGAPMRVAFEIAGVEAVKEAVRAGMGI
GFVSAMSLRHEDAALVPRSLAPAPLTRHFSILVPHGGAPSRVAAQFLEMSLAQDLA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=300, Percent_Identity=33, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788481, Length=249, Percent_Identity=34.9397590361446, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1787530, Length=260, Percent_Identity=28.4615384615385, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1790208, Length=250, Percent_Identity=30.4, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788296, Length=249, Percent_Identity=27.710843373494, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787879, Length=193, Percent_Identity=33.160621761658, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790399, Length=285, Percent_Identity=27.0175438596491, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788887, Length=173, Percent_Identity=34.1040462427746, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081904, Length=202, Percent_Identity=30.1980198019802, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787806, Length=308, Percent_Identity=24.6753246753247, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1789204, Length=274, Percent_Identity=28.1021897810219, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788626, Length=245, Percent_Identity=28.1632653061224, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788748, Length=266, Percent_Identity=27.4436090225564, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31212; Mature: 31081

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDQLITFAAVAEHLNISRAAVALHLSQPAVSGQLRLLQDEFGEPLYQRDGRGIRLTPV
CCHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCHHHHHHHHHCCHHHHCCCCCEEECCC
GEQLAQYAKAQRDTFAQARAFRDAVRGLEAGTLRIGASTTPASYLLPYLIAAFQPHAPRV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEE
SIQTMSGNTADVVAALPSLDIALIEGPPGETLPPGTAVHAWHEDEIVAIVPAGHPLAAPG
EEEECCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCC
YDVGVTLDALAAHPLVLREAGSAVRQLVERAFAHGGAPMRVAFEIAGVEAVKEAVRAGMG
CCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCC
IGFVSAMSLRHEDAALVPRSLAPAPLTRHFSILVPHGGAPSRVAAQFLEMSLAQDLA
HHHHHHHHHCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TPDQLITFAAVAEHLNISRAAVALHLSQPAVSGQLRLLQDEFGEPLYQRDGRGIRLTPV
CHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCHHHHHHHHHCCHHHHCCCCCEEECCC
GEQLAQYAKAQRDTFAQARAFRDAVRGLEAGTLRIGASTTPASYLLPYLIAAFQPHAPRV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEE
SIQTMSGNTADVVAALPSLDIALIEGPPGETLPPGTAVHAWHEDEIVAIVPAGHPLAAPG
EEEECCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCC
YDVGVTLDALAAHPLVLREAGSAVRQLVERAFAHGGAPMRVAFEIAGVEAVKEAVRAGMG
CCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCC
IGFVSAMSLRHEDAALVPRSLAPAPLTRHFSILVPHGGAPSRVAAQFLEMSLAQDLA
HHHHHHHHHCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]