Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
---|---|
Accession | NC_008542 |
Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is cobK [H]
Identifier: 116689699
GI number: 116689699
Start: 1864776
End: 1865507
Strand: Direct
Name: cobK [H]
Synonym: Bcen2424_1677
Alternate gene names: 116689699
Gene position: 1864776-1865507 (Clockwise)
Preceding gene: 116689698
Following gene: 116689700
Centisome position: 53.53
GC content: 72.4
Gene sequence:
>732_bases ATGAGCCCGCGCATCCTGCTGCTCGGCGGCACCGGCGATGCGCTGAAAATCGCGCGCGCGCTCGGCCCGCATCATGTCTA TAGTCTCGCCGGTCTCGGCAAGACGCCCGACGACTTGCGCTGCGACGTGCGCGTCGGCGGTTTCGGCGGCGCAGCCGGGC TTACCGCGTATCTGCGCGACGCGGGTATCGGCCTCGTGATCGACGCAACCCATCCGTATGCCGCGCGAATCAGCGCGAAC GCCGCGACGGCGACGCGCGACGCAGGCGTGCCGCTGTGGGCGCTGCGCCGCGCGCCGTGGACGCCTCAACCGGGCGACGA CTGGCGCATGGTCGACGACTGGGCCGGTATCGAGGCCGCGCTCGCGCCGTTCAGGCGCCCGCTGTTCACGCTCGGCCGCG AACCGCTCGCGCATCTCGACGCGATTCCGCCGCACCAGTTCTGGCTCGTGCGCTGCCTCGATGCGCATCCCGGCAACGCC CGTGCGCAGGTCGTCGCCGCGCGCGGGCCGTTCACGCCCGACGGCGAGCGCGCGCTGTTCGCGCTGGCTGGCATCGACGT CGTAGTCAGCAAGAACAGCGGTGGCGCGGCAACCGAGGCCAAGCTCGATGTCGCGCGCGAACGCAGGCTGCCGGTCGTGA TGCTGCGCCGGCCGCCGCTGCCCGATGCCGACCGCGCGTTCGACTCGGTCACGGCACTCATCGACGCACTCGATCCGGCC GCGCGCGCCTGA
Upstream 100 bases:
>100_bases GCGCGCATGCGCTGCGGGTGGCACGCGACATCGTGCCGCCGTCGGTCGCGGTCGAGATGTTCGCGATCGACCGGCAGGGC CGCTTCGTCGGGGCGGCGCG
Downstream 100 bases:
>100_bases CGCGACGCAGCGGCCACCCAACGAATTGACGGAGAAATTTCGATGACGGTGTATTTCATCGGCGCGGGCCCAGGCGACCC GGAGCTGATCACGGTGAAGG
Product: cobalt-precorrin-6x reductase
Products: NA
Alternate protein names: Precorrin-6X reductase [H]
Number of amino acids: Translated: 243; Mature: 242
Protein sequence:
>243_residues MSPRILLLGGTGDALKIARALGPHHVYSLAGLGKTPDDLRCDVRVGGFGGAAGLTAYLRDAGIGLVIDATHPYAARISAN AATATRDAGVPLWALRRAPWTPQPGDDWRMVDDWAGIEAALAPFRRPLFTLGREPLAHLDAIPPHQFWLVRCLDAHPGNA RAQVVAARGPFTPDGERALFALAGIDVVVSKNSGGAATEAKLDVARERRLPVVMLRRPPLPDADRAFDSVTALIDALDPA ARA
Sequences:
>Translated_243_residues MSPRILLLGGTGDALKIARALGPHHVYSLAGLGKTPDDLRCDVRVGGFGGAAGLTAYLRDAGIGLVIDATHPYAARISAN AATATRDAGVPLWALRRAPWTPQPGDDWRMVDDWAGIEAALAPFRRPLFTLGREPLAHLDAIPPHQFWLVRCLDAHPGNA RAQVVAARGPFTPDGERALFALAGIDVVVSKNSGGAATEAKLDVARERRLPVVMLRRPPLPDADRAFDSVTALIDALDPA ARA >Mature_242_residues SPRILLLGGTGDALKIARALGPHHVYSLAGLGKTPDDLRCDVRVGGFGGAAGLTAYLRDAGIGLVIDATHPYAARISANA ATATRDAGVPLWALRRAPWTPQPGDDWRMVDDWAGIEAALAPFRRPLFTLGREPLAHLDAIPPHQFWLVRCLDAHPGNAR AQVVAARGPFTPDGERALFALAGIDVVVSKNSGGAATEAKLDVARERRLPVVMLRRPPLPDADRAFDSVTALIDALDPAA RA
Specific function: Catalyzes the reduction of the macrocycle of precorrin- 6X into precorrin-6Y [H]
COG id: COG2099
COG function: function code H; Precorrin-6x reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the precorrin-6x reductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003723 [H]
Pfam domain/function: PF02571 CbiJ [H]
EC number: =1.3.1.54 [H]
Molecular weight: Translated: 25758; Mature: 25627
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: PS51014 COBK_CBIJ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPRILLLGGTGDALKIARALGPHHVYSLAGLGKTPDDLRCDVRVGGFGGAAGLTAYLRD CCCCEEEEECCCHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHH AGIGLVIDATHPYAARISANAATATRDAGVPLWALRRAPWTPQPGDDWRMVDDWAGIEAA CCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEHHCCCCCCCCCCCCEEEHHHCCHHHH LAPFRRPLFTLGREPLAHLDAIPPHQFWLVRCLDAHPGNARAQVVAARGPFTPDGERALF HHHHHHHHHHHCCCCHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEE ALAGIDVVVSKNSGGAATEAKLDVARERRLPVVMLRRPPLPDADRAFDSVTALIDALDPA EEECEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHH ARA HCC >Mature Secondary Structure SPRILLLGGTGDALKIARALGPHHVYSLAGLGKTPDDLRCDVRVGGFGGAAGLTAYLRD CCCEEEEECCCHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHH AGIGLVIDATHPYAARISANAATATRDAGVPLWALRRAPWTPQPGDDWRMVDDWAGIEAA CCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEHHCCCCCCCCCCCCEEEHHHCCHHHH LAPFRRPLFTLGREPLAHLDAIPPHQFWLVRCLDAHPGNARAQVVAARGPFTPDGERALF HHHHHHHHHHHCCCCHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEE ALAGIDVVVSKNSGGAATEAKLDVARERRLPVVMLRRPPLPDADRAFDSVTALIDALDPA EEECEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHH ARA HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2211521; 1732193 [H]