Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is cbiD [H]
Identifier: 116689698
GI number: 116689698
Start: 1863691
End: 1864779
Strand: Direct
Name: cbiD [H]
Synonym: Bcen2424_1676
Alternate gene names: 116689698
Gene position: 1863691-1864779 (Clockwise)
Preceding gene: 116689697
Following gene: 116689699
Centisome position: 53.49
GC content: 70.98
Gene sequence:
>1089_bases ATGCGCGACGAAACCCCCGAACAACCCGCGCCGCTGCGCTTCGGCTACACGACAGGCAGCTGCGCGACCGCGACTTCGCT TGCGGCCGCGCGGCTGCTGCTCGCGGGTCAGGCGGACGACGCGGTCGAGATCGTGCTGCCGAAGGGGCAGCGCGTGATGA TGCGGCTCGAGTTCTGCCGCGCGACGGCCGACGGCGCCGAAGCCGGCACGATCAAGGATGCCGGCGACGATCCGGACGTC ACGCATGGCGCGCTGATCTTCGCACGCGTCGCGCTCGCGGCGGCGCCCGGCGTGCGCTTTCATGCCGGGCCGGGCGTCGG CACGGTCACGCGCGCGGGGCTGACGTTGCCGGTCGGCGAACCGGCGATCAATCCGGTGCCGCGCCAGATGATGACTACCC ACCTCGAAGCGCTCGCCGCTGAACACGGCTACGCGGGCGGCTTCGACGTGACGATCGGCGTCGAAGGCGGCGAGGCGCTT GCGCTGAAGACGATGAACCCGCGCCTGGGCATCGTCGGCGGGCTGTCGATCCTCGGCACGACCGGCATCGTGCGGCCGTT CTCGTGTTCGGCCTATATCGCGTCGATTCATCAGGGCATCGACGTCGCACGGGCGAACGGCATCGCGCATATCGCCGCCT GCACGGGCAACGCCAGCGAGGACGCGATGCGCGCGCACTACCAGTTGCCCGACATGGCGCTGATCGAGATGGGCGATTTC GCGGGCGCGGTGCTCAAGCACCTGCGGCGCGCGCCGGTCGCGCGCCTGTCGATGTGCGGCGGCTTCGGCAAGTTGAGCAA GCTCGCGGCCGGCCATCTCGACCTGCACAGCCGCCATTCGAGCATCGACCTGCCGTTGCTCGCGCAATGGGCGGCCGAAG CCGGCGCGAACGAGGCGCTGCAGGCCGCGATGCGCGCGGCCAACACGAGCCAGGAAGCGTTGAAACTGGCGCAGGCCGAC GGCGTGCCGCTCGGCGATCTCGTCTGCGCGCATGCGCTGCGGGTGGCACGCGACATCGTGCCGCCGTCGGTCGCGGTCGA GATGTTCGCGATCGACCGGCAGGGCCGCTTCGTCGGGGCGGCGCGATGA
Upstream 100 bases:
>100_bases CGGTCACGCTGTACGACGTGCGCAAGCCCGACACGGCAGACGCGACCGACACGGCCGACTCGTCGAATTCGTCGAACGCA ACGGACGCAACGGACGCGTG
Downstream 100 bases:
>100_bases GCCCGCGCATCCTGCTGCTCGGCGGCACCGGCGATGCGCTGAAAATCGCGCGCGCGCTCGGCCCGCATCATGTCTATAGT CTCGCCGGTCTCGGCAAGAC
Product: cobalt-precorrin-6A synthase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 362; Mature: 362
Protein sequence:
>362_residues MRDETPEQPAPLRFGYTTGSCATATSLAAARLLLAGQADDAVEIVLPKGQRVMMRLEFCRATADGAEAGTIKDAGDDPDV THGALIFARVALAAAPGVRFHAGPGVGTVTRAGLTLPVGEPAINPVPRQMMTTHLEALAAEHGYAGGFDVTIGVEGGEAL ALKTMNPRLGIVGGLSILGTTGIVRPFSCSAYIASIHQGIDVARANGIAHIAACTGNASEDAMRAHYQLPDMALIEMGDF AGAVLKHLRRAPVARLSMCGGFGKLSKLAAGHLDLHSRHSSIDLPLLAQWAAEAGANEALQAAMRAANTSQEALKLAQAD GVPLGDLVCAHALRVARDIVPPSVAVEMFAIDRQGRFVGAAR
Sequences:
>Translated_362_residues MRDETPEQPAPLRFGYTTGSCATATSLAAARLLLAGQADDAVEIVLPKGQRVMMRLEFCRATADGAEAGTIKDAGDDPDV THGALIFARVALAAAPGVRFHAGPGVGTVTRAGLTLPVGEPAINPVPRQMMTTHLEALAAEHGYAGGFDVTIGVEGGEAL ALKTMNPRLGIVGGLSILGTTGIVRPFSCSAYIASIHQGIDVARANGIAHIAACTGNASEDAMRAHYQLPDMALIEMGDF AGAVLKHLRRAPVARLSMCGGFGKLSKLAAGHLDLHSRHSSIDLPLLAQWAAEAGANEALQAAMRAANTSQEALKLAQAD GVPLGDLVCAHALRVARDIVPPSVAVEMFAIDRQGRFVGAAR >Mature_362_residues MRDETPEQPAPLRFGYTTGSCATATSLAAARLLLAGQADDAVEIVLPKGQRVMMRLEFCRATADGAEAGTIKDAGDDPDV THGALIFARVALAAAPGVRFHAGPGVGTVTRAGLTLPVGEPAINPVPRQMMTTHLEALAAEHGYAGGFDVTIGVEGGEAL ALKTMNPRLGIVGGLSILGTTGIVRPFSCSAYIASIHQGIDVARANGIAHIAACTGNASEDAMRAHYQLPDMALIEMGDF AGAVLKHLRRAPVARLSMCGGFGKLSKLAAGHLDLHSRHSSIDLPLLAQWAAEAGANEALQAAMRAANTSQEALKLAQAD GVPLGDLVCAHALRVARDIVPPSVAVEMFAIDRQGRFVGAAR
Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]
COG id: COG1903
COG function: function code H; Cobalamin biosynthesis protein CbiD
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CbiD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002748 [H]
Pfam domain/function: PF01888 CbiD [H]
EC number: NA
Molecular weight: Translated: 37438; Mature: 37438
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDETPEQPAPLRFGYTTGSCATATSLAAARLLLAGQADDAVEIVLPKGQRVMMRLEFCR CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH ATADGAEAGTIKDAGDDPDVTHGALIFARVALAAAPGVRFHAGPGVGTVTRAGLTLPVGE HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHCCEEEECCC PAINPVPRQMMTTHLEALAAEHGYAGGFDVTIGVEGGEALALKTMNPRLGIVGGLSILGT CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECHHHHCC TGIVRPFSCSAYIASIHQGIDVARANGIAHIAACTGNASEDAMRAHYQLPDMALIEMGDF CCCCCCCCHHHHHHHHHHCCHHHHCCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEHHHH AGAVLKHLRRAPVARLSMCGGFGKLSKLAAGHLDLHSRHSSIDLPLLAQWAAEAGANEAL HHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHCCHHHHH QAAMRAANTSQEALKLAQADGVPLGDLVCAHALRVARDIVPPSVAVEMFAIDRQGRFVGA HHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCEECC AR CC >Mature Secondary Structure MRDETPEQPAPLRFGYTTGSCATATSLAAARLLLAGQADDAVEIVLPKGQRVMMRLEFCR CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH ATADGAEAGTIKDAGDDPDVTHGALIFARVALAAAPGVRFHAGPGVGTVTRAGLTLPVGE HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHCCEEEECCC PAINPVPRQMMTTHLEALAAEHGYAGGFDVTIGVEGGEALALKTMNPRLGIVGGLSILGT CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECHHHHCC TGIVRPFSCSAYIASIHQGIDVARANGIAHIAACTGNASEDAMRAHYQLPDMALIEMGDF CCCCCCCCHHHHHHHHHHCCHHHHCCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEHHHH AGAVLKHLRRAPVARLSMCGGFGKLSKLAAGHLDLHSRHSSIDLPLLAQWAAEAGANEAL HHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHCCHHHHH QAAMRAANTSQEALKLAQADGVPLGDLVCAHALRVARDIVPPSVAVEMFAIDRQGRFVGA HHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCEECC AR CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA