| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is yfcU [H]
Identifier: 116689649
GI number: 116689649
Start: 1794034
End: 1796520
Strand: Direct
Name: yfcU [H]
Synonym: Bcen2424_1627
Alternate gene names: 116689649
Gene position: 1794034-1796520 (Clockwise)
Preceding gene: 116689648
Following gene: 116689650
Centisome position: 51.49
GC content: 67.67
Gene sequence:
>2487_bases GTGCGAATCAGACATTCCTTCCTTTGCGTCTCCGTGCTGGTCGTCGGCAGCCAGAGCCAGGCGACGGAATTCAATTCGTC GTTCCTCGACATCGACGGAACGAGCAACGTCGACCTGTCGCAGTTCTCGCAGCCGGACTTCACGTTGCCCGGCGAGTACA TGCTCGACGTGCAGGTCAACGACCTGTTCTACGGGCTGCAAGCGATCGAGTTCATCGCGCTCGACGCATCGGGCGCGGGC AAGCCGTGCCTGCGGCCGGAACTCGTCGCGCAGTTCGGGCTGAAGCCATCGCTCGCGAAGGACCTGCCGCGCTTCCAGGG CGGGCGGTGCGTCGATCTCGGCGCGATCGAGGGCGCGACCGTGCGCTACCTGAAAAGCGACGGGCGGCTCAAGATCACGA TTCCGCAGGCCGCGCTCGAGTTCACCGATTCGACCTACCTGCCGCCGTCGCGCTGGTCCGAAGGCATTCCGGGTGCGATG CTCGACTATCGCGTGATCGCGAACACGAACCGCAACTTCGGGGCGGGCGGCGGGCAGACGAATTCGATCCAGGCCTACGG GACGATCGGCGCGAACTGGGATGCGTGGCGTTTTCGCGGCGACTACCAGGCGCAATCGAACGTGGGCAACACGGCGTACG CGGACCGCACGTTCCGCTTCAGCCGGCTTTATGCGTTTCGCGCGCTGCCGTCGATCCAGTCGACGGTGACGTTCGGCGAC GACTACCTGACCTCCGACATCTTCGACACGTTCGCGCTGACGGGCGCGTCGATCCGCAGCGACGACCGCATGCTGCCGCC GTCGCTGCGCGGCTATGCGCCGCTGATCTCGGGTGTCGCGCGCACCAACGCGACCGTGACCGTGTCGCAGGCCGGCCGCG TGCTGTACGTGACGCGCGTGTCGCCGGGCGCGTTCGCGCTGCAGAACATCAACACGAGCGTGCAGGGCACGCTCGACGTG GCGGTCGAGGAAGAAGACGGCAGCGTGCAGCGCTTCCAGGTGACGACGGCCGCCGTGCCGTTCCTCGCCCGCACCGGCCA GTTGCGCTACAAGGCGGCGGTCGGCAAGCCGCGCCTGTTCGGTGGCGGCGGCATCACGCCGTTCTTCGGCTTCGGCGAAA TCGCGTACGGCCTGCCGTTCGACATCACCGCCTATGGCGGCTTCATCGCCGCGTCGGGCTACACGTCGGTCGCGCTCGGC GTCGGTCGCGATTTCGGCGCGTTCGGCGCAGTGTCGGCCGATGTCACGCACGCGCGGGCGAAGCTGTGGTGGAGCGGCGC GACGCGCAACGGCAACTCGTACCGCATCAACTATTCGAAGCACTTCGACGGGCTCGATGCCGACGTGCGCTTCTTCGGCT ACCGCTTCTCCGAGCGCGAATATACGAACTTCGCGCAGTTCTCCGGCGACCCGACGTCATACGGCCTCGCCAACAGCAAG CAGCGCTATTCGGCGACGATGTCGAAGCGCTTCGGCGACACGTCGACCTATTTCTCGTACGACCAGACGACCTACTGGGC GCGTTCGTCCGAGCAGCGGGTCGGCCTGACGCTCACGCGTGCGTTCTCGATCGGCACGCTGCGCAACCTGAACGTCAGCG TGTCGGCATTCCGCACGCAGAGCGCGGGCGCGAGCGGTAACCAGTTCTCGGTCACCGCGACGCTGCCGATCGGCGGCCGC CACACCGTCACGTCGAACCTGACGACGGGCAACGGCAGCACCAGCGCGAACGCCGGCTACATCTACGACGATTCGGCCGG CCGCACCTATCAGGTCAACGCGGGCGCGACCGACGGCCGCGCGTCGGCGAACGCGAGCTTCCGCCAGCGCACGTCGGCGT ACCAGCTCAACGCACAGGCGTCGACGCTCGCCAATGCGTATGCGGCCGCGTCGCTCGAAGTCGACGGCTCGTTCGTCGCG ACGCAGTACGGCGTGTCCGCGCACGCGAATGGCAATGCGGGCGATACGCGGCTGCTGGTGTCGACCGACGGCGTGCCCGA CGTGCCGCTGTCCGGCACGCTCACGCACACCGATTCGCGCGGCTACGCGGTGCTCGACGGCATCTCGCCGTACAACGTGT ACGACGCGACCGTCAACGTCGAGAAGCTGCCGCTCGAAGTGCAGGTGACGAACCCGATCCAGCGCATGGTGCTGACCGAC GGCGCGATCGGCTTCGTGAAGTTCTCCGCCGCGCGCGGCAGCAACCTGTACCTGACGCTGACCGATGCGGCCGGCAAGCC GCTGCCGTTCGGCGCGTCGGTGCAGGACGCGGCGAACGGCAAGGAACTCGGCATCGTCGGCGAGGGCGGTGCGGCGTTCC TGACCCAGGTTCAGCCGAAATCCACGCTGGCGGTGCGGGCGGGCGAACGGACGCTCTGCACGGTCGACGCACTGCCGAAC CAGCTTCAACTCGAAGGCACGCCGATCCCGGTGACGTGCCAGCCGCCCGGCGAGTCGCATGCAGCGGCCGCGCGGGGCGA ACGATGA
Upstream 100 bases:
>100_bases CGCTACCAGTAAGCGTCCGTACCGGAGGAGGGATGCGTGCATCCCTTCCTCCTGCCTCTTTCCTCCCGTTTCCTTCTCCC TGGACTCCCGGTAGCGCCGC
Downstream 100 bases:
>100_bases TTTCACGGACCCAGCGATGAAGCATTCCTTTTCCCTTTCCTTCCCGCGGCGCGCGCTGTGCGCGTTCGCGACCGTCGGTG CGCTGCTTGCCGGCGCCGCC
Product: fimbrial biogenesis outer membrane usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 828; Mature: 828
Protein sequence:
>828_residues MRIRHSFLCVSVLVVGSQSQATEFNSSFLDIDGTSNVDLSQFSQPDFTLPGEYMLDVQVNDLFYGLQAIEFIALDASGAG KPCLRPELVAQFGLKPSLAKDLPRFQGGRCVDLGAIEGATVRYLKSDGRLKITIPQAALEFTDSTYLPPSRWSEGIPGAM LDYRVIANTNRNFGAGGGQTNSIQAYGTIGANWDAWRFRGDYQAQSNVGNTAYADRTFRFSRLYAFRALPSIQSTVTFGD DYLTSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQAGRVLYVTRVSPGAFALQNINTSVQGTLDV AVEEEDGSVQRFQVTTAAVPFLARTGQLRYKAAVGKPRLFGGGGITPFFGFGEIAYGLPFDITAYGGFIAASGYTSVALG VGRDFGAFGAVSADVTHARAKLWWSGATRNGNSYRINYSKHFDGLDADVRFFGYRFSEREYTNFAQFSGDPTSYGLANSK QRYSATMSKRFGDTSTYFSYDQTTYWARSSEQRVGLTLTRAFSIGTLRNLNVSVSAFRTQSAGASGNQFSVTATLPIGGR HTVTSNLTTGNGSTSANAGYIYDDSAGRTYQVNAGATDGRASANASFRQRTSAYQLNAQASTLANAYAAASLEVDGSFVA TQYGVSAHANGNAGDTRLLVSTDGVPDVPLSGTLTHTDSRGYAVLDGISPYNVYDATVNVEKLPLEVQVTNPIQRMVLTD GAIGFVKFSAARGSNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEGGAAFLTQVQPKSTLAVRAGERTLCTVDALPN QLQLEGTPIPVTCQPPGESHAAAARGER
Sequences:
>Translated_828_residues MRIRHSFLCVSVLVVGSQSQATEFNSSFLDIDGTSNVDLSQFSQPDFTLPGEYMLDVQVNDLFYGLQAIEFIALDASGAG KPCLRPELVAQFGLKPSLAKDLPRFQGGRCVDLGAIEGATVRYLKSDGRLKITIPQAALEFTDSTYLPPSRWSEGIPGAM LDYRVIANTNRNFGAGGGQTNSIQAYGTIGANWDAWRFRGDYQAQSNVGNTAYADRTFRFSRLYAFRALPSIQSTVTFGD DYLTSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQAGRVLYVTRVSPGAFALQNINTSVQGTLDV AVEEEDGSVQRFQVTTAAVPFLARTGQLRYKAAVGKPRLFGGGGITPFFGFGEIAYGLPFDITAYGGFIAASGYTSVALG VGRDFGAFGAVSADVTHARAKLWWSGATRNGNSYRINYSKHFDGLDADVRFFGYRFSEREYTNFAQFSGDPTSYGLANSK QRYSATMSKRFGDTSTYFSYDQTTYWARSSEQRVGLTLTRAFSIGTLRNLNVSVSAFRTQSAGASGNQFSVTATLPIGGR HTVTSNLTTGNGSTSANAGYIYDDSAGRTYQVNAGATDGRASANASFRQRTSAYQLNAQASTLANAYAAASLEVDGSFVA TQYGVSAHANGNAGDTRLLVSTDGVPDVPLSGTLTHTDSRGYAVLDGISPYNVYDATVNVEKLPLEVQVTNPIQRMVLTD GAIGFVKFSAARGSNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEGGAAFLTQVQPKSTLAVRAGERTLCTVDALPN QLQLEGTPIPVTCQPPGESHAAAARGER >Mature_828_residues MRIRHSFLCVSVLVVGSQSQATEFNSSFLDIDGTSNVDLSQFSQPDFTLPGEYMLDVQVNDLFYGLQAIEFIALDASGAG KPCLRPELVAQFGLKPSLAKDLPRFQGGRCVDLGAIEGATVRYLKSDGRLKITIPQAALEFTDSTYLPPSRWSEGIPGAM LDYRVIANTNRNFGAGGGQTNSIQAYGTIGANWDAWRFRGDYQAQSNVGNTAYADRTFRFSRLYAFRALPSIQSTVTFGD DYLTSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQAGRVLYVTRVSPGAFALQNINTSVQGTLDV AVEEEDGSVQRFQVTTAAVPFLARTGQLRYKAAVGKPRLFGGGGITPFFGFGEIAYGLPFDITAYGGFIAASGYTSVALG VGRDFGAFGAVSADVTHARAKLWWSGATRNGNSYRINYSKHFDGLDADVRFFGYRFSEREYTNFAQFSGDPTSYGLANSK QRYSATMSKRFGDTSTYFSYDQTTYWARSSEQRVGLTLTRAFSIGTLRNLNVSVSAFRTQSAGASGNQFSVTATLPIGGR HTVTSNLTTGNGSTSANAGYIYDDSAGRTYQVNAGATDGRASANASFRQRTSAYQLNAQASTLANAYAAASLEVDGSFVA TQYGVSAHANGNAGDTRLLVSTDGVPDVPLSGTLTHTDSRGYAVLDGISPYNVYDATVNVEKLPLEVQVTNPIQRMVLTD GAIGFVKFSAARGSNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEGGAAFLTQVQPKSTLAVRAGERTLCTVDALPN QLQLEGTPIPVTCQPPGESHAAAARGER
Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI87081778, Length=826, Percent_Identity=34.1404358353511, Blast_Score=430, Evalue=1e-121, Organism=Escherichia coli, GI1786744, Length=855, Percent_Identity=30.0584795321637, Blast_Score=291, Evalue=9e-80, Organism=Escherichia coli, GI1790772, Length=817, Percent_Identity=29.3757649938801, Blast_Score=271, Evalue=1e-73, Organism=Escherichia coli, GI1787172, Length=862, Percent_Identity=27.1461716937355, Blast_Score=263, Evalue=3e-71, Organism=Escherichia coli, GI1786332, Length=838, Percent_Identity=28.6396181384248, Blast_Score=262, Evalue=7e-71, Organism=Escherichia coli, GI1789533, Length=837, Percent_Identity=27.0011947431302, Blast_Score=229, Evalue=8e-61, Organism=Escherichia coli, GI1788427, Length=837, Percent_Identity=26.0454002389486, Blast_Score=206, Evalue=4e-54, Organism=Escherichia coli, GI1789610, Length=780, Percent_Identity=23.7179487179487, Blast_Score=89, Evalue=8e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 88327; Mature: 88327
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIRHSFLCVSVLVVGSQSQATEFNSSFLDIDGTSNVDLSQFSQPDFTLPGEYMLDVQVN CCCCHHEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCCCEEEEEEEH DLFYGLQAIEFIALDASGAGKPCLRPELVAQFGLKPSLAKDLPRFQGGRCVDLGAIEGAT HHHHHHEEEEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHCHHHCCCEEEEECCCCCCE VRYLKSDGRLKITIPQAALEFTDSTYLPPSRWSEGIPGAMLDYRVIANTNRNFGAGGGQT EEEEECCCEEEEEECHHHEEECCCCCCCHHHHCCCCCCHHEEEEEEEECCCCCCCCCCCC NSIQAYGTIGANWDAWRFRGDYQAQSNVGNTAYADRTFRFSRLYAFRALPSIQSTVTFGD CCEEEEEECCCCCCCEEEECCCCCCCCCCCCEECCCCEEHHHHHHHHHCCCCHHEEEECC DYLTSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQAGRVLYVTRV HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEE SPGAFALQNINTSVQGTLDVAVEEEDGSVQRFQVTTAAVPFLARTGQLRYKAAVGKPRLF CCCEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCEEEEEECCCCEEE GGGGITPFFGFGEIAYGLPFDITAYGGFIAASGYTSVALGVGRDFGAFGAVSADVTHARA CCCCCCCCCCCCHHHCCCCEEEEECCCEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEE KLWWSGATRNGNSYRINYSKHFDGLDADVRFFGYRFSEREYTNFAQFSGDPTSYGLANSK EEEECCCCCCCCEEEEEEHHCCCCCCCCEEEEEEEECCCCCCCHHHCCCCCCCCCCCCCH QRYSATMSKRFGDTSTYFSYDQTTYWARSSEQRVGLTLTRAFSIGTLRNLNVSVSAFRTQ HHHHHHHHHHCCCCCEEEEECCEEEEECCCCCEEEEEEEEEEECCCEEECEEEEEEEEEC SAGASGNQFSVTATLPIGGRHTVTSNLTTGNGSTSANAGYIYDDSAGRTYQVNAGATDGR CCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCEEEECCCCCEEEEECCCCCCC ASANASFRQRTSAYQLNAQASTLANAYAAASLEVDGSFVATQYGVSAHANGNAGDTRLLV CCCCCHHHHCCCEEEECCHHHHHHHHHEEEEEEECCCEEEEECCEEECCCCCCCCEEEEE STDGVPDVPLSGTLTHTDSRGYAVLDGISPYNVYDATVNVEKLPLEVQVTNPIQRMVLTD ECCCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEEEEEEECEEEEEECCHHHHHEECC GAIGFVKFSAARGSNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEGGAAFLTQVQPK CCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHCCCCCEEEEEECCCCEEEEECCCC STLAVRAGERTLCTVDALPNQLQLEGTPIPVTCQPPGESHAAAARGER CEEEEECCCCEEEEECCCCCEEEECCCCEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure MRIRHSFLCVSVLVVGSQSQATEFNSSFLDIDGTSNVDLSQFSQPDFTLPGEYMLDVQVN CCCCHHEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCCCEEEEEEEH DLFYGLQAIEFIALDASGAGKPCLRPELVAQFGLKPSLAKDLPRFQGGRCVDLGAIEGAT HHHHHHEEEEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHCHHHCCCEEEEECCCCCCE VRYLKSDGRLKITIPQAALEFTDSTYLPPSRWSEGIPGAMLDYRVIANTNRNFGAGGGQT EEEEECCCEEEEEECHHHEEECCCCCCCHHHHCCCCCCHHEEEEEEEECCCCCCCCCCCC NSIQAYGTIGANWDAWRFRGDYQAQSNVGNTAYADRTFRFSRLYAFRALPSIQSTVTFGD CCEEEEEECCCCCCCEEEECCCCCCCCCCCCEECCCCEEHHHHHHHHHCCCCHHEEEECC DYLTSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQAGRVLYVTRV HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEE SPGAFALQNINTSVQGTLDVAVEEEDGSVQRFQVTTAAVPFLARTGQLRYKAAVGKPRLF CCCEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCEEEEEECCCCEEE GGGGITPFFGFGEIAYGLPFDITAYGGFIAASGYTSVALGVGRDFGAFGAVSADVTHARA CCCCCCCCCCCCHHHCCCCEEEEECCCEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEE KLWWSGATRNGNSYRINYSKHFDGLDADVRFFGYRFSEREYTNFAQFSGDPTSYGLANSK EEEECCCCCCCCEEEEEEHHCCCCCCCCEEEEEEEECCCCCCCHHHCCCCCCCCCCCCCH QRYSATMSKRFGDTSTYFSYDQTTYWARSSEQRVGLTLTRAFSIGTLRNLNVSVSAFRTQ HHHHHHHHHHCCCCCEEEEECCEEEEECCCCCEEEEEEEEEEECCCEEECEEEEEEEEEC SAGASGNQFSVTATLPIGGRHTVTSNLTTGNGSTSANAGYIYDDSAGRTYQVNAGATDGR CCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCEEEECCCCCEEEEECCCCCCC ASANASFRQRTSAYQLNAQASTLANAYAAASLEVDGSFVATQYGVSAHANGNAGDTRLLV CCCCCHHHHCCCEEEECCHHHHHHHHHEEEEEEECCCEEEEECCEEECCCCCCCCEEEEE STDGVPDVPLSGTLTHTDSRGYAVLDGISPYNVYDATVNVEKLPLEVQVTNPIQRMVLTD ECCCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEEEEEEECEEEEEECCHHHHHEECC GAIGFVKFSAARGSNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEGGAAFLTQVQPK CCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHCCCCCEEEEEECCCCEEEEECCCC STLAVRAGERTLCTVDALPNQLQLEGTPIPVTCQPPGESHAAAARGER CEEEEECCCCEEEEECCCCCEEEECCCCEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]