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The map label for this gene is yfcS [H]

Identifier: 116689650

GI number: 116689650

Start: 1796492

End: 1797283

Strand: Direct

Name: yfcS [H]

Synonym: Bcen2424_1628

Alternate gene names: 116689650

Gene position: 1796492-1797283 (Clockwise)

Preceding gene: 116689649

Following gene: 116689651

Centisome position: 51.57

GC content: 65.91

Gene sequence:

>792_bases
ATGCAGCGGCCGCGCGGGGCGAACGATGATTTCACGGACCCAGCGATGAAGCATTCCTTTTCCCTTTCCTTCCCGCGGCG
CGCGCTGTGCGCGTTCGCGACCGTCGGTGCGCTGCTTGCCGGCGCCGCCCATGCGGCGATCGTGCCCGATCGCACGCGCG
TGATCTTCAACGAAGGCGAACAGGCCGCGATCGTGACGATCACCAACAAGAGCACGACGTATCCGTATCTCGTGCAGTCG
TGGCTCGAAGATGCGAACGGCAACAAGATCACGTCGCCGCTGATGGTCGTGCCGCCGCTGCAGCGGGTCGAGGCGAACGA
GCGCAACGTGCTGCGGATCGCGAAGCTGCCCGGTACGCAACTGCCGGCCGATCGCGAAACGGTGTTCTACCTGAACATCC
GCGAAGTGCCGCCGAAGACGGATACGCCGAACACGCTGCAGATCGCGCTGCACACGCAGATGAAGCTGTTCTACCGGCCG
AAGGCCGTGCAGCCCGCGCGCGACGAGGACTGGACGCTGCCGATGACGCTGCGGGTGGATGCGGCCGCGCACAAGCTGGT
GTTCGACAATCCGACGCCTTACCACGTGACGGTGGTCGACGTGAGCGCGGGCGCGCAGAAGACGCCGGTGCCGATCGAGC
CGGTCATGGTGAGCCCGATGAGCACGGCCGACGTGCCGTTCAAGGCCGCGACGCCGTCGACGCTGTTCGTCACGCACATC
GACGACTACGGCGGCCAGGTGGCGGTCGAGTATGCGTGCGAGGCCGGTGCGTGCAAGAGCGTGAAGAAATGA

Upstream 100 bases:

>100_bases
GCGGGCGAACGGACGCTCTGCACGGTCGACGCACTGCCGAACCAGCTTCAACTCGAAGGCACGCCGATCCCGGTGACGTG
CCAGCCGCCCGGCGAGTCGC

Downstream 100 bases:

>100_bases
GCGGGGCCGCGAGACAACGCAACGCACCGCTCGCGGCGTGGCTGCGCTGGGTCGTCCTGGCGATGCTGCTCGCGGCGGTT
CAGCCCGCGTGGGCGCTGCG

Product: pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MQRPRGANDDFTDPAMKHSFSLSFPRRALCAFATVGALLAGAAHAAIVPDRTRVIFNEGEQAAIVTITNKSTTYPYLVQS
WLEDANGNKITSPLMVVPPLQRVEANERNVLRIAKLPGTQLPADRETVFYLNIREVPPKTDTPNTLQIALHTQMKLFYRP
KAVQPARDEDWTLPMTLRVDAAAHKLVFDNPTPYHVTVVDVSAGAQKTPVPIEPVMVSPMSTADVPFKAATPSTLFVTHI
DDYGGQVAVEYACEAGACKSVKK

Sequences:

>Translated_263_residues
MQRPRGANDDFTDPAMKHSFSLSFPRRALCAFATVGALLAGAAHAAIVPDRTRVIFNEGEQAAIVTITNKSTTYPYLVQS
WLEDANGNKITSPLMVVPPLQRVEANERNVLRIAKLPGTQLPADRETVFYLNIREVPPKTDTPNTLQIALHTQMKLFYRP
KAVQPARDEDWTLPMTLRVDAAAHKLVFDNPTPYHVTVVDVSAGAQKTPVPIEPVMVSPMSTADVPFKAATPSTLFVTHI
DDYGGQVAVEYACEAGACKSVKK
>Mature_263_residues
MQRPRGANDDFTDPAMKHSFSLSFPRRALCAFATVGALLAGAAHAAIVPDRTRVIFNEGEQAAIVTITNKSTTYPYLVQS
WLEDANGNKITSPLMVVPPLQRVEANERNVLRIAKLPGTQLPADRETVFYLNIREVPPKTDTPNTLQIALHTQMKLFYRP
KAVQPARDEDWTLPMTLRVDAAAHKLVFDNPTPYHVTVVDVSAGAQKTPVPIEPVMVSPMSTADVPFKAATPSTLFVTHI
DDYGGQVAVEYACEAGACKSVKK

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1788677, Length=216, Percent_Identity=40.7407407407407, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI87082203, Length=228, Percent_Identity=36.8421052631579, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1786936, Length=222, Percent_Identity=34.2342342342342, Blast_Score=150, Evalue=6e-38,
Organism=Escherichia coli, GI1790771, Length=223, Percent_Identity=33.1838565022422, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1789532, Length=226, Percent_Identity=32.3008849557522, Blast_Score=123, Evalue=9e-30,
Organism=Escherichia coli, GI1786333, Length=237, Percent_Identity=32.4894514767932, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1788428, Length=213, Percent_Identity=30.5164319248826, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787171, Length=208, Percent_Identity=33.1730769230769, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786743, Length=213, Percent_Identity=31.924882629108, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87081806, Length=236, Percent_Identity=28.3898305084746, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 28795; Mature: 28795

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRPRGANDDFTDPAMKHSFSLSFPRRALCAFATVGALLAGAAHAAIVPDRTRVIFNEGE
CCCCCCCCCCCCCCHHHCEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEECCC
QAAIVTITNKSTTYPYLVQSWLEDANGNKITSPLMVVPPLQRVEANERNVLRIAKLPGTQ
CEEEEEEECCCCCCHHHHHHHHHCCCCCEECCCEEECCCHHHHCCCCCCEEEEEECCCCC
LPADRETVFYLNIREVPPKTDTPNTLQIALHTQMKLFYRPKAVQPARDEDWTLPMTLRVD
CCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEC
AAAHKLVFDNPTPYHVTVVDVSAGAQKTPVPIEPVMVSPMSTADVPFKAATPSTLFVTHI
CCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCEECCCCCEEEEEEE
DDYGGQVAVEYACEAGACKSVKK
CCCCCEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MQRPRGANDDFTDPAMKHSFSLSFPRRALCAFATVGALLAGAAHAAIVPDRTRVIFNEGE
CCCCCCCCCCCCCCHHHCEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEECCC
QAAIVTITNKSTTYPYLVQSWLEDANGNKITSPLMVVPPLQRVEANERNVLRIAKLPGTQ
CEEEEEEECCCCCCHHHHHHHHHCCCCCEECCCEEECCCHHHHCCCCCCEEEEEECCCCC
LPADRETVFYLNIREVPPKTDTPNTLQIALHTQMKLFYRPKAVQPARDEDWTLPMTLRVD
CCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEC
AAAHKLVFDNPTPYHVTVVDVSAGAQKTPVPIEPVMVSPMSTADVPFKAATPSTLFVTHI
CCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCEECCCCCEEEEEEE
DDYGGQVAVEYACEAGACKSVKK
CCCCCEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]