Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is ytfH [C]
Identifier: 116689608
GI number: 116689608
Start: 1746900
End: 1747388
Strand: Reverse
Name: ytfH [C]
Synonym: Bcen2424_1586
Alternate gene names: 116689608
Gene position: 1747388-1746900 (Counterclockwise)
Preceding gene: 116689611
Following gene: 116689607
Centisome position: 50.16
GC content: 69.12
Gene sequence:
>489_bases ATGAAATGGGATGACATCGGCACGCTGAACTGTTCGGTCGCGCGCACGCTCGCCGTGCTCGGCGACCGCTGGACCATGCT GATCCTGCGCAACGCGTTCCTCGGCTGCCGCCGCTTCGATGCGTTCCAGACCCAGCTTGGCGTGACGCGCCACGTGCTGG CCGAACGGCTGGCGCGACTCGTCGACGAAGGCGTGCTCGTCAAGCGCGCGTACCAAGAGCGCCCGCCGCGCTTCGAATAC CGGCTGACCGAAAAGGGGCTTGACCTCTACCCGGCCCTGCTCGCGCTGATGGCGTGGGGCGACCGCTGGAAGGACGACGG CCAGGGGCCGCCGGTGCAATTGCGCCACCGAACCTGCGGGCAACTGATGCATGCGGTGACCGTGTGCTCGGCCTGTGGCG AACCACTCGACGCGCGCGACGTGCAGCCCGAGCCCGGGCCCGGGTGGATCGTGTCGGACGGGGCTGAGGCGCCTGCAGCC AGGGATTGA
Upstream 100 bases:
>100_bases ACGCGGCCGCGCCCATTGCGACCGAAGGCGGGTTCTATAATCGAACCCGCTATTTCGCTGAACCGCCGCACGACCGCCGC AAGAGGCAAGAGACTCGACG
Downstream 100 bases:
>100_bases CGGGCGCGCTACAGGCGGCTCGCGAATGACTGTCTGACGCACTCGCTGCACATACGCTTCGGCCATGGGCCGCATTGAGT CCAGGTCCTTCCAACCGGGG
Product: HxlR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 162; Mature: 162
Protein sequence:
>162_residues MKWDDIGTLNCSVARTLAVLGDRWTMLILRNAFLGCRRFDAFQTQLGVTRHVLAERLARLVDEGVLVKRAYQERPPRFEY RLTEKGLDLYPALLALMAWGDRWKDDGQGPPVQLRHRTCGQLMHAVTVCSACGEPLDARDVQPEPGPGWIVSDGAEAPAA RD
Sequences:
>Translated_162_residues MKWDDIGTLNCSVARTLAVLGDRWTMLILRNAFLGCRRFDAFQTQLGVTRHVLAERLARLVDEGVLVKRAYQERPPRFEY RLTEKGLDLYPALLALMAWGDRWKDDGQGPPVQLRHRTCGQLMHAVTVCSACGEPLDARDVQPEPGPGWIVSDGAEAPAA RD >Mature_162_residues MKWDDIGTLNCSVARTLAVLGDRWTMLILRNAFLGCRRFDAFQTQLGVTRHVLAERLARLVDEGVLVKRAYQERPPRFEY RLTEKGLDLYPALLALMAWGDRWKDDGQGPPVQLRHRTCGQLMHAVTVCSACGEPLDARDVQPEPGPGWIVSDGAEAPAA RD
Specific function: Unknown
COG id: COG1733
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002577 - InterPro: IPR011991 [H]
Pfam domain/function: PF01638 DUF24 [H]
EC number: NA
Molecular weight: Translated: 18142; Mature: 18142
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: PS51118 HTH_HXLR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKWDDIGTLNCSVARTLAVLGDRWTMLILRNAFLGCRRFDAFQTQLGVTRHVLAERLARL CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDEGVLVKRAYQERPPRFEYRLTEKGLDLYPALLALMAWGDRWKDDGQGPPVQLRHRTCG HHCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHH QLMHAVTVCSACGEPLDARDVQPEPGPGWIVSDGAEAPAARD HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC >Mature Secondary Structure MKWDDIGTLNCSVARTLAVLGDRWTMLILRNAFLGCRRFDAFQTQLGVTRHVLAERLARL CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDEGVLVKRAYQERPPRFEYRLTEKGLDLYPALLALMAWGDRWKDDGQGPPVQLRHRTCG HHCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHH QLMHAVTVCSACGEPLDARDVQPEPGPGWIVSDGAEAPAARD HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]