Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is citH [H]
Identifier: 116689611
GI number: 116689611
Start: 1749312
End: 1750598
Strand: Reverse
Name: citH [H]
Synonym: Bcen2424_1589
Alternate gene names: 116689611
Gene position: 1750598-1749312 (Counterclockwise)
Preceding gene: 116689612
Following gene: 116689608
Centisome position: 50.25
GC content: 67.83
Gene sequence:
>1287_bases ATGAATACGACCACCCTGACCTCGCAGGACGCCGCGCGCCCCAGCGCCGCGAAGATCCGGCGCATCATCTTCGCGGCGTC GATCGGCAACGCACTCGAATGGTTCGACCTGATCGTCTACGGCTTCTTCGCGGTCACGATCGCCAAGCTGTTCTTCCCCG CCACGAGCGAAGCGACGTCGCTGATGCTGACGCTCGGCACGTTCGGGCTGTCCTACCTGATCCGGCCGATCGGCGGCTTC GTGCTCGGCGCGTACGCGGACCGCGCGGGCCGCAAGGCGTCGCTGCTGCTGTCGATCGCGATGATGATGGCCGGCACGCT GCTGATCGCGCTGATGCCGACCTACGCATCGATCGGCATGCTCGCGCCGCTCGGGATCATGCTGTCGCGGCTGATGCAGG GCTTTTCCGCCGGCGGCGAATTCGCGAGTTCGACCGCGTTTCTCGTCGAGCACGCGCCGCAGCGGCGCGGCTTCATGTCG AGCTGGCAGTTCGCGAGCCAGGGCCTCGCGACGTTGCTCGCGTCGGGCTTCGGCGCGCTGCTGACGGCCACGCTGACCAC CGCGCAACTCGAAAGCTGGGGCTGGCGCGTGCCGTTCCTGTTCGGCCTCGCGATCGGCCCGGTCGGGCTGTACATCCGCC GCTACGTCGACGAAGGCGTCGAGTTCAAGACGCAGGCGCGCTCCGAAGCGCCGGTGCGCGAACTGTTCGCGGATCAGAAG ATGCGGCTGCTGCTGTCGGTCGGCGCGCTCGTGATCTCGACCGCGATCAACTACATGATCCTGTACATGCCGACCTACGC GATCAAGCAGCTCGGGCTGCCCGCATCGACCGGTTTCGCGGCGACGCTCGCGACCGGCTTCGTGCTGACGCTCGTCACGC CGGTCGTCGGCCATCTGTCCGACAGCACCGGGCGAATCCGCATGATGGCGGTCGCGGCCGTGCTGATGCTCCTGACCGTG TGGCCGACGTTCGCCTGGCTCACGCGCCACGCGTCGTTCGCGACGATGCTCGCCGCACTGGTCTGGATCGGCGCGCTGAA GGCGATGTACTGCGGCGCGCTGCCGGCGCTGATGGCCGAACTGTTCCCGTCGCAGACGCGCGCCACCGGGCTCGCGGTCA GCTACAACACCGGCGTCACGCTGTTCGGCGGCTTCGCGCCGTTCGTCATCACCTGGTTGATCAGCACGACCGGCAACCGG CTGTCGCCGGCGCTCTATCTGATGGGATGTGCGCTGCTGAGCCTCGCCGCACTGTTCGTCGCGCGCACGCGGCTGAAAAT GCGCTGA
Upstream 100 bases:
>100_bases TCTCGGCGACGACGCGCCGCCCGTTCGCCGCGCGGCATCCGCCGCGGCCGGCACCGCCCTGTAACGCGCCTCGCCCCTTT TCACGGGACCTGCACACACG
Downstream 100 bases:
>100_bases CGCGAGAAACGGCGGCGCAGCAAGGCGCCGCCGAAACCGCCGGACTCGGTGCGACTCGGCCCGTCGCGGCATCGCTGCCG CGCGGGCCGCGCGCCGTTTA
Product: major facilitator transporter
Products: betaine [Cytoplasm]; Proton [Cytoplasm]; L-proline [Cytoplasm] [C]
Alternate protein names: Citrate carrier protein; Citrate transporter [H]
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MNTTTLTSQDAARPSAAKIRRIIFAASIGNALEWFDLIVYGFFAVTIAKLFFPATSEATSLMLTLGTFGLSYLIRPIGGF VLGAYADRAGRKASLLLSIAMMMAGTLLIALMPTYASIGMLAPLGIMLSRLMQGFSAGGEFASSTAFLVEHAPQRRGFMS SWQFASQGLATLLASGFGALLTATLTTAQLESWGWRVPFLFGLAIGPVGLYIRRYVDEGVEFKTQARSEAPVRELFADQK MRLLLSVGALVISTAINYMILYMPTYAIKQLGLPASTGFAATLATGFVLTLVTPVVGHLSDSTGRIRMMAVAAVLMLLTV WPTFAWLTRHASFATMLAALVWIGALKAMYCGALPALMAELFPSQTRATGLAVSYNTGVTLFGGFAPFVITWLISTTGNR LSPALYLMGCALLSLAALFVARTRLKMR
Sequences:
>Translated_428_residues MNTTTLTSQDAARPSAAKIRRIIFAASIGNALEWFDLIVYGFFAVTIAKLFFPATSEATSLMLTLGTFGLSYLIRPIGGF VLGAYADRAGRKASLLLSIAMMMAGTLLIALMPTYASIGMLAPLGIMLSRLMQGFSAGGEFASSTAFLVEHAPQRRGFMS SWQFASQGLATLLASGFGALLTATLTTAQLESWGWRVPFLFGLAIGPVGLYIRRYVDEGVEFKTQARSEAPVRELFADQK MRLLLSVGALVISTAINYMILYMPTYAIKQLGLPASTGFAATLATGFVLTLVTPVVGHLSDSTGRIRMMAVAAVLMLLTV WPTFAWLTRHASFATMLAALVWIGALKAMYCGALPALMAELFPSQTRATGLAVSYNTGVTLFGGFAPFVITWLISTTGNR LSPALYLMGCALLSLAALFVARTRLKMR >Mature_428_residues MNTTTLTSQDAARPSAAKIRRIIFAASIGNALEWFDLIVYGFFAVTIAKLFFPATSEATSLMLTLGTFGLSYLIRPIGGF VLGAYADRAGRKASLLLSIAMMMAGTLLIALMPTYASIGMLAPLGIMLSRLMQGFSAGGEFASSTAFLVEHAPQRRGFMS SWQFASQGLATLLASGFGALLTATLTTAQLESWGWRVPFLFGLAIGPVGLYIRRYVDEGVEFKTQARSEAPVRELFADQK MRLLLSVGALVISTAINYMILYMPTYAIKQLGLPASTGFAATLATGFVLTLVTPVVGHLSDSTGRIRMMAVAAVLMLLTV WPTFAWLTRHASFATMLAALVWIGALKAMYCGALPALMAELFPSQTRATGLAVSYNTGVTLFGGFAPFVITWLISTTGNR LSPALYLMGCALLSLAALFVARTRLKMR
Specific function: Uptake of citrate across the boundary membrane with the concomitant transport of protons into the cell (symport system) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1790550, Length=425, Percent_Identity=32.7058823529412, Blast_Score=239, Evalue=3e-64, Organism=Escherichia coli, GI1788942, Length=402, Percent_Identity=35.8208955223881, Blast_Score=207, Evalue=2e-54, Organism=Escherichia coli, GI1788292, Length=436, Percent_Identity=29.1284403669725, Blast_Score=192, Evalue=4e-50, Organism=Escherichia coli, GI1789941, Length=430, Percent_Identity=31.6279069767442, Blast_Score=159, Evalue=5e-40, Organism=Escherichia coli, GI87082231, Length=436, Percent_Identity=24.3119266055046, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI87082404, Length=423, Percent_Identity=24.3498817966903, Blast_Score=74, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 45899; Mature: 45899
Theoretical pI: Translated: 10.55; Mature: 10.55
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTTTLTSQDAARPSAAKIRRIIFAASIGNALEWFDLIVYGFFAVTIAKLFFPATSEATS CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LMLTLGTFGLSYLIRPIGGFVLGAYADRAGRKASLLLSIAMMMAGTLLIALMPTYASIGM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAPLGIMLSRLMQGFSAGGEFASSTAFLVEHAPQRRGFMSSWQFASQGLATLLASGFGAL HHHHHHHHHHHHHHHCCCCCHHCCHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHH LTATLTTAQLESWGWRVPFLFGLAIGPVGLYIRRYVDEGVEFKTQARSEAPVRELFADQK HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHH MRLLLSVGALVISTAINYMILYMPTYAIKQLGLPASTGFAATLATGFVLTLVTPVVGHLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC DSTGRIRMMAVAAVLMLLTVWPTFAWLTRHASFATMLAALVWIGALKAMYCGALPALMAE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFPSQTRATGLAVSYNTGVTLFGGFAPFVITWLISTTGNRLSPALYLMGCALLSLAALFV HCCCCHHHCCEEEEECCCEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH ARTRLKMR HHHHHCCC >Mature Secondary Structure MNTTTLTSQDAARPSAAKIRRIIFAASIGNALEWFDLIVYGFFAVTIAKLFFPATSEATS CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LMLTLGTFGLSYLIRPIGGFVLGAYADRAGRKASLLLSIAMMMAGTLLIALMPTYASIGM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAPLGIMLSRLMQGFSAGGEFASSTAFLVEHAPQRRGFMSSWQFASQGLATLLASGFGAL HHHHHHHHHHHHHHHCCCCCHHCCHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHH LTATLTTAQLESWGWRVPFLFGLAIGPVGLYIRRYVDEGVEFKTQARSEAPVRELFADQK HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHH MRLLLSVGALVISTAINYMILYMPTYAIKQLGLPASTGFAATLATGFVLTLVTPVVGHLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC DSTGRIRMMAVAAVLMLLTVWPTFAWLTRHASFATMLAALVWIGALKAMYCGALPALMAE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFPSQTRATGLAVSYNTGVTLFGGFAPFVITWLISTTGNRLSPALYLMGCALLSLAALFV HCCCCHHHCCEEEEECCCEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH ARTRLKMR HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: betaine [Periplasm]; Proton [Periplasm]; L-proline [Periplasm] [C]
Specific reaction: Proton [Periplasm] + betaine [Periplasm] = Proton [Cytoplasm] + betaine [Cytoplasm] Proton [Periplasm] + L-proline [Periplasm] = Proton [Cytoplasm] + L-proline [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2186908 [H]