Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689601
Identifier: 116689601
GI number: 116689601
Start: 1742262
End: 1743005
Strand: Reverse
Name: 116689601
Synonym: Bcen2424_1579
Alternate gene names: NA
Gene position: 1743005-1742262 (Counterclockwise)
Preceding gene: 116689607
Following gene: 116689599
Centisome position: 50.03
GC content: 65.05
Gene sequence:
>744_bases ATGAGCGACGCCTGGGGAACCTTCCCTGCCAGAATGGGCGACCATCAGGCTTTCATCAGCTTCAACCACGGCTTCGCGGA AATCGCCGAAGGCGATCCGCGCACGTCGCTGCTCAGCGTGCGGGTCCCCTTTGCACATCCGTCGCCTGAAGGGCTGCCGA CCGGCGACGAATTCGCCGATCTCGCGAAGATCGAGGATCTGCTCGACGCCGCGATCATCGCGAAAGGCGGCGTGCAGGTC GGCCGCATCACCGTCGACGGCAACCGGGATTTTCTTTTCTACGTGCCGTTCGACGAAGAGGCAGCCGCGGAAATCGTCGA CTCGCTGGCCGACCAGACGACCTACGCGCTGCAGTATGCCCACCAGGACGATCCGGACAAGACGACATACTGGCAGACGC TCTACCCGACCGACGACGACTGGCAGATCATGCGCGACATGCGCACGCTGGATGCGCTGCGGCAGCAAGGCGACGCACCG GACGTGAGCCGGCGCGTGATGCACTGGGCATACTTCCCCGACCCGAGCGACGCGCACCAGTTCGCGGACTGGGCCGAAGC GAAAGGCTATCCGGTCGAATCGGTCGCGCCGACCGAAGACGGCAAGTCGGCGGTGCGGTTTTCGCACGAAGGCACGCTCG CGCTCGCCGACATCACGCGCCATACGGTCGCGCTCAGTCGCGAGGTACGCGCGCTCGGCGGGAACTACGACGGATGGGAA ACCAGCGTCGAACAGGCAGGTTGA
Upstream 100 bases:
>100_bases CGGCCTGCGATCGCGTGCGCTGCTTCGGCCAACGCGATTTTCGATGATACATTGGGACGCTTTGCAACCGTCAACAGACA ATCGTGTACGGGAGAAACAC
Downstream 100 bases:
>100_bases GCGGAGTGCGTGCCGGTTGCGCGTGATGTGACGTCACGCATGCGACGCAAAAAACATCCCGGCAGCGTTGTTACGCGCCG CCGGGATCAAGGCATCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MSDAWGTFPARMGDHQAFISFNHGFAEIAEGDPRTSLLSVRVPFAHPSPEGLPTGDEFADLAKIEDLLDAAIIAKGGVQV GRITVDGNRDFLFYVPFDEEAAAEIVDSLADQTTYALQYAHQDDPDKTTYWQTLYPTDDDWQIMRDMRTLDALRQQGDAP DVSRRVMHWAYFPDPSDAHQFADWAEAKGYPVESVAPTEDGKSAVRFSHEGTLALADITRHTVALSREVRALGGNYDGWE TSVEQAG
Sequences:
>Translated_247_residues MSDAWGTFPARMGDHQAFISFNHGFAEIAEGDPRTSLLSVRVPFAHPSPEGLPTGDEFADLAKIEDLLDAAIIAKGGVQV GRITVDGNRDFLFYVPFDEEAAAEIVDSLADQTTYALQYAHQDDPDKTTYWQTLYPTDDDWQIMRDMRTLDALRQQGDAP DVSRRVMHWAYFPDPSDAHQFADWAEAKGYPVESVAPTEDGKSAVRFSHEGTLALADITRHTVALSREVRALGGNYDGWE TSVEQAG >Mature_246_residues SDAWGTFPARMGDHQAFISFNHGFAEIAEGDPRTSLLSVRVPFAHPSPEGLPTGDEFADLAKIEDLLDAAIIAKGGVQVG RITVDGNRDFLFYVPFDEEAAAEIVDSLADQTTYALQYAHQDDPDKTTYWQTLYPTDDDWQIMRDMRTLDALRQQGDAPD VSRRVMHWAYFPDPSDAHQFADWAEAKGYPVESVAPTEDGKSAVRFSHEGTLALADITRHTVALSREVRALGGNYDGWET SVEQAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27354; Mature: 27223
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDAWGTFPARMGDHQAFISFNHGFAEIAEGDPRTSLLSVRVPFAHPSPEGLPTGDEFAD CCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHH LAKIEDLLDAAIIAKGGVQVGRITVDGNRDFLFYVPFDEEAAAEIVDSLADQTTYALQYA HHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHEEEEEC HQDDPDKTTYWQTLYPTDDDWQIMRDMRTLDALRQQGDAPDVSRRVMHWAYFPDPSDAHQ CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEECCCCCHHHH FADWAEAKGYPVESVAPTEDGKSAVRFSHEGTLALADITRHTVALSREVRALGGNYDGWE HHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHH TSVEQAG CHHHHCC >Mature Secondary Structure SDAWGTFPARMGDHQAFISFNHGFAEIAEGDPRTSLLSVRVPFAHPSPEGLPTGDEFAD CCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHH LAKIEDLLDAAIIAKGGVQVGRITVDGNRDFLFYVPFDEEAAAEIVDSLADQTTYALQYA HHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHEEEEEC HQDDPDKTTYWQTLYPTDDDWQIMRDMRTLDALRQQGDAPDVSRRVMHWAYFPDPSDAHQ CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEECCCCCHHHH FADWAEAKGYPVESVAPTEDGKSAVRFSHEGTLALADITRHTVALSREVRALGGNYDGWE HHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHH TSVEQAG CHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA