Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689597
Identifier: 116689597
GI number: 116689597
Start: 1737976
End: 1739097
Strand: Direct
Name: 116689597
Synonym: Bcen2424_1575
Alternate gene names: NA
Gene position: 1737976-1739097 (Clockwise)
Preceding gene: 116689594
Following gene: 116689598
Centisome position: 49.89
GC content: 56.68
Gene sequence:
>1122_bases TTGCCCCCCATGAAGAGCATCCGTATCTGTTTGTTCGCTGCGCTCGTTTCGACGACCGCATTGTCCTCACATGCCCAGTT GGCGACTGGTCAATCGCAGTCGACTTCTCAGCCCGGTGCGAAGCTTTCCTCGACAACCCCCAATGCGACGCCCGCCGTTG CATCGTTCGGCAATCAACTTACTTGGCTTAACTCGTTGATCCCCTGTACCACAGCCTGCGCCCAAACGTGGTCGCAATCG GCTGGGGGCGGAATGGGTTTGCTGGGGGCAACGCGCACCTCGGATAATTCGTTGACCGGGTCGATGGCTGCTCAGGGCGT TGCCGGCTATGCGATCAATGACAATACGAAACACGTTCAGACCGCCTACGCCACCTATTCCGAAGTGCGGAGAAAGCCGG GGGCCGGGACGACGCAAGGTCATGAAATCGACGTCGTTAATCAGGGTTCCGTAGTCGGCGTTGATCCGTACAACATGTTC CGGATTGGCATTACGCCGGGGCTTTGGCTGTCATCGGGGCGTCCGGATGTGAAGACCGGTGCAGCCAACGCGAGCACTGC CGTCGGAATCGTAAACAACAACACTGCTTTCGAAAACGGGATCGTGTTTCACAGTAATGCCTTGAACACGACGACCGGCG AAGGTAACGCAATCGCGCTGCCACGAAAAGATGCTGTCGTATGGTTCGGTAGCGCAGGGAACAAGGTTGCGGCAATTCGA AGCGATGCGACGACTGCGTCACTTCGTGCGATATTTGCGAATGGCCTTCTTGCGCTACAGAATCTCTCCGGTGTTAACGA GCACACGTTTTCGGATGCCGGGAACTATTCCGCAAAGGGAAATATTTCAGCCGCCGGGACGGGCTCAATGCCGCTGTATA GCACAACCGGAAACGGCATGAATGCTCCGCACATGGTGCAAGGGTCGGTCGCGTTGGCGTCCGGTCATGCTACGGTCAAG CTCACGGGTTTGGCTGTCTACACGTCCGCGTCGAGTTATACATGCACGGCCAACGACACGACGGAGGCAAACGCAGTAAA GGTCAGTCAAGATTCCGGGACTTCGATTACTTTCACGGGAACCGGCACGAACAGGGTTCAGTTTCTCTGTGCGGGCAATT GA
Upstream 100 bases:
>100_bases CTGTGCGGGCATCGACGTCAGAGCGTTGGAAGTGCTCGCGATCATCGCTCATGGCCTGCTCGAATACACGTTCGTCCTCG ACATTTCACTTCCACGCTGA
Downstream 100 bases:
>100_bases TCTGGATGTTTCGAGCGTTAGGTCCCGGTGGCTTCTTTGCGTGCCTCCATCGCCGCCGCTGGCTGTATAACGGCCCTGCC GCAGAAGCAGTCGGATCCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 373; Mature: 372
Protein sequence:
>373_residues MPPMKSIRICLFAALVSTTALSSHAQLATGQSQSTSQPGAKLSSTTPNATPAVASFGNQLTWLNSLIPCTTACAQTWSQS AGGGMGLLGATRTSDNSLTGSMAAQGVAGYAINDNTKHVQTAYATYSEVRRKPGAGTTQGHEIDVVNQGSVVGVDPYNMF RIGITPGLWLSSGRPDVKTGAANASTAVGIVNNNTAFENGIVFHSNALNTTTGEGNAIALPRKDAVVWFGSAGNKVAAIR SDATTASLRAIFANGLLALQNLSGVNEHTFSDAGNYSAKGNISAAGTGSMPLYSTTGNGMNAPHMVQGSVALASGHATVK LTGLAVYTSASSYTCTANDTTEANAVKVSQDSGTSITFTGTGTNRVQFLCAGN
Sequences:
>Translated_373_residues MPPMKSIRICLFAALVSTTALSSHAQLATGQSQSTSQPGAKLSSTTPNATPAVASFGNQLTWLNSLIPCTTACAQTWSQS AGGGMGLLGATRTSDNSLTGSMAAQGVAGYAINDNTKHVQTAYATYSEVRRKPGAGTTQGHEIDVVNQGSVVGVDPYNMF RIGITPGLWLSSGRPDVKTGAANASTAVGIVNNNTAFENGIVFHSNALNTTTGEGNAIALPRKDAVVWFGSAGNKVAAIR SDATTASLRAIFANGLLALQNLSGVNEHTFSDAGNYSAKGNISAAGTGSMPLYSTTGNGMNAPHMVQGSVALASGHATVK LTGLAVYTSASSYTCTANDTTEANAVKVSQDSGTSITFTGTGTNRVQFLCAGN >Mature_372_residues PPMKSIRICLFAALVSTTALSSHAQLATGQSQSTSQPGAKLSSTTPNATPAVASFGNQLTWLNSLIPCTTACAQTWSQSA GGGMGLLGATRTSDNSLTGSMAAQGVAGYAINDNTKHVQTAYATYSEVRRKPGAGTTQGHEIDVVNQGSVVGVDPYNMFR IGITPGLWLSSGRPDVKTGAANASTAVGIVNNNTAFENGIVFHSNALNTTTGEGNAIALPRKDAVVWFGSAGNKVAAIRS DATTASLRAIFANGLLALQNLSGVNEHTFSDAGNYSAKGNISAAGTGSMPLYSTTGNGMNAPHMVQGSVALASGHATVKL TGLAVYTSASSYTCTANDTTEANAVKVSQDSGTSITFTGTGTNRVQFLCAGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37914; Mature: 37783
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPMKSIRICLFAALVSTTALSSHAQLATGQSQSTSQPGAKLSSTTPNATPAVASFGNQL CCCHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCCCCCCEECCCCCCCCHHHHHCCCCH TWLNSLIPCTTACAQTWSQSAGGGMGLLGATRTSDNSLTGSMAAQGVAGYAINDNTKHVQ HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHCCEEEEEECCCCCEEH TAYATYSEVRRKPGAGTTQGHEIDVVNQGSVVGVDPYNMFRIGITPGLWLSSGRPDVKTG HHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCEEEEEECCCCEEECCCCCCCCCC AANASTAVGIVNNNTAFENGIVFHSNALNTTTGEGNAIALPRKDAVVWFGSAGNKVAAIR CCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEE SDATTASLRAIFANGLLALQNLSGVNEHTFSDAGNYSAKGNISAAGTGSMPLYSTTGNGM CCCCHHHHHHHHHCCCEEEHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCC NAPHMVQGSVALASGHATVKLTGLAVYTSASSYTCTANDTTEANAVKVSQDSGTSITFTG CCCEEEECCEEEECCCEEEEEEEEEEEECCCCEEEECCCCCCCCEEEEECCCCCEEEEEE TGTNRVQFLCAGN CCCCEEEEEECCC >Mature Secondary Structure PPMKSIRICLFAALVSTTALSSHAQLATGQSQSTSQPGAKLSSTTPNATPAVASFGNQL CCHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCCCCCCEECCCCCCCCHHHHHCCCCH TWLNSLIPCTTACAQTWSQSAGGGMGLLGATRTSDNSLTGSMAAQGVAGYAINDNTKHVQ HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHCCEEEEEECCCCCEEH TAYATYSEVRRKPGAGTTQGHEIDVVNQGSVVGVDPYNMFRIGITPGLWLSSGRPDVKTG HHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCEEEEEECCCCEEECCCCCCCCCC AANASTAVGIVNNNTAFENGIVFHSNALNTTTGEGNAIALPRKDAVVWFGSAGNKVAAIR CCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEE SDATTASLRAIFANGLLALQNLSGVNEHTFSDAGNYSAKGNISAAGTGSMPLYSTTGNGM CCCCHHHHHHHHHCCCEEEHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCC NAPHMVQGSVALASGHATVKLTGLAVYTSASSYTCTANDTTEANAVKVSQDSGTSITFTG CCCEEEECCEEEECCCEEEEEEEEEEEECCCCEEEECCCCCCCCEEEEECCCCCEEEEEE TGTNRVQFLCAGN CCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA