Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689594
Identifier: 116689594
GI number: 116689594
Start: 1734881
End: 1735693
Strand: Direct
Name: 116689594
Synonym: Bcen2424_1572
Alternate gene names: NA
Gene position: 1734881-1735693 (Clockwise)
Preceding gene: 116689593
Following gene: 116689597
Centisome position: 49.8
GC content: 49.45
Gene sequence:
>813_bases GTGAAAAAGGGGATTGTTGTATTTTTCGGAATGCTAATGCTGTATATGTCATCGGCAATTGCAACGGTGATTCCTTCTGG GGCCACCCTAAATCTAGGTGCGCAGGTTTGTTCTGAAAATGGCCAGTACTGCCTCGACATGCAAGCGTCCGATGGCAACC TGGTGTTGTATGGTCCGAGCGGCGTAGTCTGGTCCGCACAGGTTGCGGGGAAGGGTGTTACGCGAGCAGTCGTGCAGCCG GACGGAAATTTCGTTCTGTACACTTCAGCCAATGTACCTGTGCTCTATTTCAATACCCAGCACCCGGGTGCATATCTGAA TGTTCAAAATGACGGCAATCTCGCTCTTTATTGGGATCGTCCGGTATGGCAAAGTCATACCAGCGATACCGGTTCTATTC AGACAAATCAGGGACGTATACTACACACCAATAACAGAATCCTCGTCGGCACGAGCTACACGGTCGGTCAGTATTTCTTG ATTTTGCAAGCTGATGGTAATTTCGTTCTTTACAAGAACGGGGGTGCAATTTGGAATTCAGGAACCCCGGGCAGAGGTGT TACTGCAGCTTGGATGCAGAACGATGGGAATTTCACGCTGACCAACGACGCGGGCACTGCGATTTGGCAAACGAACACGG AAGTGAATTCCAATAATTACTTTGCGTTCCAGCCTGATGGAAACCTTGTTGTCTATGCGCCGACTGTAAGCTGGGATCGT CTTGCTCACTTCAATCACCCGGACTATCTTGATCACGGTGGTGGCAACTACTGCTTTGCTTGTACGGCGAAGCCAATCTC AATTCCGTTCTAA
Upstream 100 bases:
>100_bases TTAATTGGTTTCGCTGTAATATTCTTTTAAGTGTGGTAATCTCGCTATGCGTCTGGCTCGATGCAAATAAAGCGAAACAT ACATTTACGAGAGGAAATCA
Downstream 100 bases:
>100_bases GGATCTGCTATTCGTACGTTGAGCCGATGGCGTGAAGATAAAGGTCCTCCGAGCGAGGGCCTTCTCGTATTGAAGCGTGG CAGCCCAAAAGAACAGGTGT
Product: curculin domain-containing protein
Products: NA
Alternate protein names: Peptidase; NLP/P60 Protein; Curculin Domain Protein Lectin
Number of amino acids: Translated: 270; Mature: 270
Protein sequence:
>270_residues MKKGIVVFFGMLMLYMSSAIATVIPSGATLNLGAQVCSENGQYCLDMQASDGNLVLYGPSGVVWSAQVAGKGVTRAVVQP DGNFVLYTSANVPVLYFNTQHPGAYLNVQNDGNLALYWDRPVWQSHTSDTGSIQTNQGRILHTNNRILVGTSYTVGQYFL ILQADGNFVLYKNGGAIWNSGTPGRGVTAAWMQNDGNFTLTNDAGTAIWQTNTEVNSNNYFAFQPDGNLVVYAPTVSWDR LAHFNHPDYLDHGGGNYCFACTAKPISIPF
Sequences:
>Translated_270_residues MKKGIVVFFGMLMLYMSSAIATVIPSGATLNLGAQVCSENGQYCLDMQASDGNLVLYGPSGVVWSAQVAGKGVTRAVVQP DGNFVLYTSANVPVLYFNTQHPGAYLNVQNDGNLALYWDRPVWQSHTSDTGSIQTNQGRILHTNNRILVGTSYTVGQYFL ILQADGNFVLYKNGGAIWNSGTPGRGVTAAWMQNDGNFTLTNDAGTAIWQTNTEVNSNNYFAFQPDGNLVVYAPTVSWDR LAHFNHPDYLDHGGGNYCFACTAKPISIPF >Mature_270_residues MKKGIVVFFGMLMLYMSSAIATVIPSGATLNLGAQVCSENGQYCLDMQASDGNLVLYGPSGVVWSAQVAGKGVTRAVVQP DGNFVLYTSANVPVLYFNTQHPGAYLNVQNDGNLALYWDRPVWQSHTSDTGSIQTNQGRILHTNNRILVGTSYTVGQYFL ILQADGNFVLYKNGGAIWNSGTPGRGVTAAWMQNDGNFTLTNDAGTAIWQTNTEVNSNNYFAFQPDGNLVVYAPTVSWDR LAHFNHPDYLDHGGGNYCFACTAKPISIPF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29301; Mature: 29301
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: PS50927 BULB_LECTIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKGIVVFFGMLMLYMSSAIATVIPSGATLNLGAQVCSENGQYCLDMQASDGNLVLYGPS CCCCEEHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCEEEEEECCCCCEEEECCC GVVWSAQVAGKGVTRAVVQPDGNFVLYTSANVPVLYFNTQHPGAYLNVQNDGNLALYWDR CEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECC PVWQSHTSDTGSIQTNQGRILHTNNRILVGTSYTVGQYFLILQADGNFVLYKNGGAIWNS CCCCCCCCCCCEEECCCCEEEECCCEEEEECCEECCEEEEEEEECCCEEEEECCCEEECC GTPGRGVTAAWMQNDGNFTLTNDAGTAIWQTNTEVNSNNYFAFQPDGNLVVYAPTVSWDR CCCCCCEEEEEEECCCCEEEECCCCCEEEEECCEECCCCEEEECCCCCEEEEECCCCHHH LAHFNHPDYLDHGGGNYCFACTAKPISIPF HCCCCCCCCCCCCCCCEEEEEECCEEECCC >Mature Secondary Structure MKKGIVVFFGMLMLYMSSAIATVIPSGATLNLGAQVCSENGQYCLDMQASDGNLVLYGPS CCCCEEHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCEEEEEECCCCCEEEECCC GVVWSAQVAGKGVTRAVVQPDGNFVLYTSANVPVLYFNTQHPGAYLNVQNDGNLALYWDR CEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECC PVWQSHTSDTGSIQTNQGRILHTNNRILVGTSYTVGQYFLILQADGNFVLYKNGGAIWNS CCCCCCCCCCCEEECCCCEEEECCCEEEEECCEECCEEEEEEEECCCEEEEECCCEEECC GTPGRGVTAAWMQNDGNFTLTNDAGTAIWQTNTEVNSNNYFAFQPDGNLVVYAPTVSWDR CCCCCCEEEEEEECCCCEEEECCCCCEEEEECCEECCCCEEEECCCCCEEEEECCCCHHH LAHFNHPDYLDHGGGNYCFACTAKPISIPF HCCCCCCCCCCCCCCCEEEEEECCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA