Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
---|---|
Accession | NC_008542 |
Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is truB [H]
Identifier: 116689524
GI number: 116689524
Start: 1657301
End: 1658233
Strand: Direct
Name: truB [H]
Synonym: Bcen2424_1502
Alternate gene names: 116689524
Gene position: 1657301-1658233 (Clockwise)
Preceding gene: 116689523
Following gene: 116689529
Centisome position: 47.57
GC content: 67.85
Gene sequence:
>933_bases ATGACGAATGCAGCACCCCCACGTCCGCGCGTGCCCCGGCGCGTGCTGGACGGCGTTCTCCTGCTCGACAAGCCGATCGG CCTGTCGAGCAACGATGCGCTGATTCGCGCAAAGCGCCTGCTTCTCGCGAAGAAAGCCGGTCACACCGGCACGCTCGATC CGCTGGCTTCGGGCCTGCTGCCGCTGTGCTTCGGCGAGGCGACGAAGTTCTCGCAGGACTTGCTCGACGCCGACAAGACG TATGAAGCGACGATGCGTCTCGGCCAGCGTACGGCCACCGGTGATGCGGAAGGCGAGGTGATCGACACGCGGCCCGTCGA ATGCGATCGCGCGGCGGTGGAGGCCGCGCTCGTGCGCTTCACCGGCGACATCGTGCAGGTACCGCCGATGTATTCGGCGC TCAAACGCGACGGCAAGCCGCTGTACGAATATGCGCGGGCCGGCCAGACCGTCGAGCGGGAGGGTCGCAACGTGACGATC CATGCGCTCGATCTGCTCGCTTGCGAGCTGCCCGACGTGACGTTTCGCGTGACCTGCAGCAAGGGCACCTACGTGCGTAC GCTCGCGGAAGATATCGGTGAAGCGCTCGGCTGCGGTGGGCATCTGACGATGCTGCGCCGTACGGGCGTCGGCGCGCTGA CGCTCGAGCATGCGGTGACGCTCGATGCGCTGTCGGACGCTGCCGAAGCGGCGCGCGATGCATGGCTTCAGCCGGTCGAT GCGCTGCTGTCGACGTTTCCGCTGGTGCGTCTCGACGAAGCCAGCGCGAAGCGGTTCCTGCACGGCCAGCGTCTACCGCT GTCGGCCCTCGAGGCGATCGACGCGGCCGATGGCGAGCGCGTGCGCGTGTACGACGCCACCCGGTTGCTGGGCGTGGCGC GCAAGGCGAATGGCGTGCTCGCCCCGGAACGGCTCGTCGTGACGGCTCAATGA
Upstream 100 bases:
>100_bases GTCGAAATGTCGCGCCTGATCAAGGAAGCGAACTCGACGCGCGCGAAGGACGACGACGAGGCCGACACGCCTGCCAAGGA CGATTGAGCTCGACCGGCCT
Downstream 100 bases:
>100_bases CGCAGCAACGCACGCAAGTGCGCGTGGCAGAATGCAAAAAGCCCGGTCGATTTCGACCGGGCTTTTTATTTGGCGTGTTG CGTTTAACGTGGCCGCTCAG
Product: tRNA pseudouridine synthase B
Products: pseudouridine 5'-phosphate; H2O
Alternate protein names: tRNA pseudouridine 55 synthase; Psi55 synthase; tRNA pseudouridylate synthase; tRNA-uridine isomerase [H]
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MTNAAPPRPRVPRRVLDGVLLLDKPIGLSSNDALIRAKRLLLAKKAGHTGTLDPLASGLLPLCFGEATKFSQDLLDADKT YEATMRLGQRTATGDAEGEVIDTRPVECDRAAVEAALVRFTGDIVQVPPMYSALKRDGKPLYEYARAGQTVEREGRNVTI HALDLLACELPDVTFRVTCSKGTYVRTLAEDIGEALGCGGHLTMLRRTGVGALTLEHAVTLDALSDAAEAARDAWLQPVD ALLSTFPLVRLDEASAKRFLHGQRLPLSALEAIDAADGERVRVYDATRLLGVARKANGVLAPERLVVTAQ
Sequences:
>Translated_310_residues MTNAAPPRPRVPRRVLDGVLLLDKPIGLSSNDALIRAKRLLLAKKAGHTGTLDPLASGLLPLCFGEATKFSQDLLDADKT YEATMRLGQRTATGDAEGEVIDTRPVECDRAAVEAALVRFTGDIVQVPPMYSALKRDGKPLYEYARAGQTVEREGRNVTI HALDLLACELPDVTFRVTCSKGTYVRTLAEDIGEALGCGGHLTMLRRTGVGALTLEHAVTLDALSDAAEAARDAWLQPVD ALLSTFPLVRLDEASAKRFLHGQRLPLSALEAIDAADGERVRVYDATRLLGVARKANGVLAPERLVVTAQ >Mature_309_residues TNAAPPRPRVPRRVLDGVLLLDKPIGLSSNDALIRAKRLLLAKKAGHTGTLDPLASGLLPLCFGEATKFSQDLLDADKTY EATMRLGQRTATGDAEGEVIDTRPVECDRAAVEAALVRFTGDIVQVPPMYSALKRDGKPLYEYARAGQTVEREGRNVTIH ALDLLACELPDVTFRVTCSKGTYVRTLAEDIGEALGCGGHLTMLRRTGVGALTLEHAVTLDALSDAAEAARDAWLQPVDA LLSTFPLVRLDEASAKRFLHGQRLPLSALEAIDAADGERVRVYDATRLLGVARKANGVLAPERLVVTAQ
Specific function: Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs [H]
COG id: COG0130
COG function: function code J; Pseudouridine synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pseudouridine synthase truB family. Type 1 subfamily [H]
Homologues:
Organism=Homo sapiens, GI21040257, Length=226, Percent_Identity=37.6106194690265, Blast_Score=132, Evalue=6e-31, Organism=Homo sapiens, GI4503337, Length=262, Percent_Identity=27.4809160305344, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI215599015, Length=261, Percent_Identity=27.5862068965517, Blast_Score=76, Evalue=3e-14, Organism=Escherichia coli, GI2367200, Length=316, Percent_Identity=45.8860759493671, Blast_Score=257, Evalue=6e-70, Organism=Caenorhabditis elegans, GI17553978, Length=271, Percent_Identity=28.0442804428044, Blast_Score=99, Evalue=4e-21, Organism=Saccharomyces cerevisiae, GI6323204, Length=299, Percent_Identity=28.0936454849498, Blast_Score=100, Evalue=3e-22, Organism=Saccharomyces cerevisiae, GI6324037, Length=199, Percent_Identity=33.1658291457286, Blast_Score=97, Evalue=2e-21, Organism=Drosophila melanogaster, GI281364189, Length=260, Percent_Identity=27.6923076923077, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI281364187, Length=260, Percent_Identity=27.6923076923077, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI281364185, Length=260, Percent_Identity=27.6923076923077, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI281364183, Length=260, Percent_Identity=27.6923076923077, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI62471759, Length=260, Percent_Identity=27.6923076923077, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI17975520, Length=260, Percent_Identity=27.6923076923077, Blast_Score=86, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002501 - InterPro: IPR020103 - InterPro: IPR015947 - InterPro: IPR014780 - InterPro: IPR015240 [H]
Pfam domain/function: PF09157 TruB-C_2; PF01509 TruB_N [H]
EC number: 4.2.1.70
Molecular weight: Translated: 33340; Mature: 33208
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNAAPPRPRVPRRVLDGVLLLDKPIGLSSNDALIRAKRLLLAKKAGHTGTLDPLASGLL CCCCCCCCCCCCHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCH PLCFGEATKFSQDLLDADKTYEATMRLGQRTATGDAEGEVIDTRPVECDRAAVEAALVRF HHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHH TGDIVQVPPMYSALKRDGKPLYEYARAGQTVEREGRNVTIHALDLLACELPDVTFRVTCS CCCEEECCCHHHHHHHCCCHHHHHHHCCCCHHHCCCEEEEEEEEEHHHCCCCCEEEEEEC KGTYVRTLAEDIGEALGCGGHLTMLRRTGVGALTLEHAVTLDALSDAAEAARDAWLQPVD CCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH ALLSTFPLVRLDEASAKRFLHGQRLPLSALEAIDAADGERVRVYDATRLLGVARKANGVL HHHHHCCCEEECHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCC APERLVVTAQ CCCEEEEEEC >Mature Secondary Structure TNAAPPRPRVPRRVLDGVLLLDKPIGLSSNDALIRAKRLLLAKKAGHTGTLDPLASGLL CCCCCCCCCCCHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCH PLCFGEATKFSQDLLDADKTYEATMRLGQRTATGDAEGEVIDTRPVECDRAAVEAALVRF HHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHH TGDIVQVPPMYSALKRDGKPLYEYARAGQTVEREGRNVTIHALDLLACELPDVTFRVTCS CCCEEECCCHHHHHHHCCCHHHHHHHCCCCHHHCCCEEEEEEEEEHHHCCCCCEEEEEEC KGTYVRTLAEDIGEALGCGGHLTMLRRTGVGALTLEHAVTLDALSDAAEAARDAWLQPVD CCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH ALLSTFPLVRLDEASAKRFLHGQRLPLSALEAIDAADGERVRVYDATRLLGVARKANGVL HHHHHCCCEEECHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCC APERLVVTAQ CCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: uracil; D-ribose 5-phosphate
Specific reaction: uracil + D-ribose 5-phosphate = pseudouridine 5'-phosphate + H2O
General reaction: addition of H2O; elimination of H2O; C-O bond cleavage [C]
Inhibitor: 1-(Tetrahydro-2-furanyl)-5-fluorouracil; 5-fluorouracil [C]
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA