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The map label for this gene is rbfA [H]

Identifier: 116689523

GI number: 116689523

Start: 1656889

End: 1657287

Strand: Direct

Name: rbfA [H]

Synonym: Bcen2424_1501

Alternate gene names: 116689523

Gene position: 1656889-1657287 (Clockwise)

Preceding gene: 116689522

Following gene: 116689524

Centisome position: 47.56

GC content: 59.65

Gene sequence:

>399_bases
ATGTCCAGGAAACGTACTTCCCCCAATCGCAACGTTCAGATCGCCGACCAGATTCAGCGCGATCTGTCCGAACTCATCAT
GCGTGAGGTCAAAGATCCGCGCATCGGCATCGTGACCATCCAGAGCGTGGAACTCACGCCGGACTATGCGCACGCGAAGG
TCTACTTCACGGCGCTCACCGGCGATCCGGAGAAGACGCAGGAGGCGCTGAACCACGCGTCGGGTCACCTGCACAACCTG
CTGTTCAAGCGCTTGCACATTCATACGGTGCCGACGCTGCATTTCCACTACGACCAGACGATCGAGAAGGCCGTCGAAAT
GTCGCGCCTGATCAAGGAAGCGAACTCGACGCGCGCGAAGGACGACGACGAGGCCGACACGCCTGCCAAGGACGATTGA

Upstream 100 bases:

>100_bases
CTCTTGGGCGGGGCAGGCTTGGGCCTGTCCCGCCCATTTTCATGGTGGCGTGCCGACAATGGCCGCCGCTTCATCCTGAT
AAACGGATCACGGATCGATC

Downstream 100 bases:

>100_bases
GCTCGACCGGCCTATGACGAATGCAGCACCCCCACGTCCGCGCGTGCCCCGGCGCGTGCTGGACGGCGTTCTCCTGCTCG
ACAAGCCGATCGGCCTGTCG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MSRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGDPEKTQEALNHASGHLHNL
LFKRLHIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRAKDDDEADTPAKDD

Sequences:

>Translated_132_residues
MSRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGDPEKTQEALNHASGHLHNL
LFKRLHIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRAKDDDEADTPAKDD
>Mature_131_residues
SRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGDPEKTQEALNHASGHLHNLL
FKRLHIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRAKDDDEADTPAKDD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=116, Percent_Identity=35.3448275862069, Blast_Score=79, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 15096; Mature: 14965

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALT
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEC
GDPEKTQEALNHASGHLHNLLFKRLHIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRAK
CCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCC
DDDEADTPAKDD
CCCCCCCCCCCC
>Mature Secondary Structure 
SRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALT
CCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEC
GDPEKTQEALNHASGHLHNLLFKRLHIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRAK
CCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCC
DDDEADTPAKDD
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA