BacMap

Definition	Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession	NC_008542
Length	3,483,902

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The map label for this gene is ygfF [C]

Identifier: 116689440

GI number: 116689440

Start: 1563993

End: 1564739

Strand: Direct

Name: ygfF [C]

Synonym: Bcen2424_1418

Alternate gene names: 116689440

Gene position: 1563993-1564739 (Clockwise)

Preceding gene: 116689439

Following gene: 116689446

Centisome position: 44.89

GC content: 67.87

Gene sequence:

>747_bases
ATGAGCAAGCTGACAGGCAAGGTCGCGATCGTCACGGGCGCATCCAAGGGCATCGGCGCGGCAATCGCGAAGGCACTGGC
CGACGAAGGCGCGGCGGTCGTCGTCAACTACGCGAGCAGCAAGGCGGGTGCGGATGCGGTCGTGAGCGCGATCACCGAAG
CGGGCGGCCGCGCGGTCGCGGTCGGCGGCGACGTGTCGAAGGCCGCCGATGCGCAACGCATCGTCGATACCGCGATCGAC
ACGTACGGCCGTCTCGACGTGCTCGTCAACAACTCCGGCGTGTACGAATTCGCACCGATCGAAGCGATCACCGAGGAACA
CTACCGCCGGCAGTTCGACACGAACGTGTTCGGCGTGCTGCTGACCACGCAGGCCGCGGTCAAGCATCTCGGCGAAGGCG
CGAGCATCATCAACATCAGCTCGGTGGTGACCAGCATCACGCCGCCGGCCAGCGCCGTGTACAGCGGCACGAAGGGCGCG
GTCGACGCGATCACCGGCGTGCTCGCGCTCGAACTCGGCCCGCGCAAGATCCGCGTGAACGCGATCAACCCGGGGATGAT
CGTGACCGAAGGCACGCACAGCGCGGGCATCATCGGGTCGGATCTGGAAGCGCAGGTGCTCGGCCAGACGCCGCTCGGCC
GCCTCGGCGAGCCGAACGACATCGCGTCGGTCGCGGTGTTCCTCGCGTCGGACGATGCGCGCTGGATGACCGGCGAGCAC
CTCGTCGTGAGCGGCGGGTTGAACTGA

Upstream 100 bases:

>100_bases
CCAGTCAGGCCGGTCGCCATCCCAACGCGTCGACGCGTCAACGCATCGTCGCGGCAACCGGCACCATCCATCGAACGTCT
TCGGACTGAGGAATGAAATC

Downstream 100 bases:

>100_bases
TCGTCCGCGGTACCGCGCGAACGGTGCGTGTGCGCCGTTCGCGCCGCTACGCGCTCATCGCCAGCGCATTCGCGCCGACG
TGCCAGCGCAGGCATTCGAC

Product: short-chain dehydrogenase/reductase SDR

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSKLTGKVAIVTGASKGIGAAIAKALADEGAAVVVNYASSKAGADAVVSAITEAGGRAVAVGGDVSKAADAQRIVDTAID
TYGRLDVLVNNSGVYEFAPIEAITEEHYRRQFDTNVFGVLLTTQAAVKHLGEGASIINISSVVTSITPPASAVYSGTKGA
VDAITGVLALELGPRKIRVNAINPGMIVTEGTHSAGIIGSDLEAQVLGQTPLGRLGEPNDIASVAVFLASDDARWMTGEH
LVVSGGLN

Sequences:

>Translated_248_residues
MSKLTGKVAIVTGASKGIGAAIAKALADEGAAVVVNYASSKAGADAVVSAITEAGGRAVAVGGDVSKAADAQRIVDTAID
TYGRLDVLVNNSGVYEFAPIEAITEEHYRRQFDTNVFGVLLTTQAAVKHLGEGASIINISSVVTSITPPASAVYSGTKGA
VDAITGVLALELGPRKIRVNAINPGMIVTEGTHSAGIIGSDLEAQVLGQTPLGRLGEPNDIASVAVFLASDDARWMTGEH
LVVSGGLN
>Mature_247_residues
SKLTGKVAIVTGASKGIGAAIAKALADEGAAVVVNYASSKAGADAVVSAITEAGGRAVAVGGDVSKAADAQRIVDTAIDT
YGRLDVLVNNSGVYEFAPIEAITEEHYRRQFDTNVFGVLLTTQAAVKHLGEGASIINISSVVTSITPPASAVYSGTKGAV
DAITGVLALELGPRKIRVNAINPGMIVTEGTHSAGIIGSDLEAQVLGQTPLGRLGEPNDIASVAVFLASDDARWMTGEHL
VVSGGLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=36.9918699186992, Blast_Score=139, Evalue=3e-33,
Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=36, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=34.6938775510204, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=33.596837944664, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI59889578, Length=220, Percent_Identity=36.3636363636364, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=32.6848249027237, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=30.6772908366534, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=32.2448979591837, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=31.9838056680162, Blast_Score=98, Evalue=8e-21,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=34.9726775956284, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI4503301, Length=264, Percent_Identity=28.7878787878788, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI4504505, Length=192, Percent_Identity=32.2916666666667, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=32.2751322751323, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=30.952380952381, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=27.5193798449612, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI109715829, Length=249, Percent_Identity=26.9076305220884, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=32.5581395348837, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI32455239, Length=179, Percent_Identity=32.9608938547486, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI5031765, Length=179, Percent_Identity=32.9608938547486, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI44680136, Length=191, Percent_Identity=25.130890052356, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI44680133, Length=191, Percent_Identity=25.130890052356, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI17738292, Length=191, Percent_Identity=25.130890052356, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=38.5542168674699, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=36.5853658536585, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=34.4262295081967, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=34.9593495934959, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=36.1788617886179, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=30.5220883534137, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=32.2834645669291, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=31.7460317460317, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=31.4516129032258, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=30.241935483871, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=27.7777777777778, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788891, Length=265, Percent_Identity=28.3018867924528, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787526, Length=241, Percent_Identity=27.8008298755187, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786701, Length=210, Percent_Identity=32.3809523809524, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=25.8823529411765, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787545, Length=259, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=34.9206349206349, Blast_Score=139, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=33.6, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI71994604, Length=259, Percent_Identity=35.1351351351351, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=29.3233082706767, Blast_Score=110, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=32.6612903225806, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=32.8358208955224, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=32.9317269076305, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=31.5589353612167, Blast_Score=107, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=31.6793893129771, Blast_Score=104, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=31.5589353612167, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=34.0080971659919, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=32.824427480916, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=30.3643724696356, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=271, Percent_Identity=29.1512915129151, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=31.4393939393939, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=29.6577946768061, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17565030, Length=266, Percent_Identity=31.203007518797, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=29.368029739777, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=28.6245353159851, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=30.4182509505703, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=29.1666666666667, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=29.3893129770992, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562904, Length=272, Percent_Identity=28.3088235294118, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=30.0751879699248, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=29.6, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17568967, Length=239, Percent_Identity=30.5439330543933, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=28.1368821292776, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=252, Percent_Identity=30.952380952381, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17536025, Length=249, Percent_Identity=26.9076305220884, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=27.6264591439689, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=29.6875, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=27.0916334661355, Blast_Score=68, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=28.5140562248996, Blast_Score=82, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6322861, Length=239, Percent_Identity=30.5439330543933, Blast_Score=75, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6322226, Length=190, Percent_Identity=27.3684210526316, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=39.7637795275591, Blast_Score=149, Evalue=1e-36,
Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=37.4501992031873, Blast_Score=138, Evalue=3e-33,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=36.2903225806452, Blast_Score=137, Evalue=8e-33,
Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=37.890625, Blast_Score=136, Evalue=1e-32,
Organism=Drosophila melanogaster, GI24643142, Length=264, Percent_Identity=33.7121212121212, Blast_Score=130, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=34.8, Blast_Score=121, Evalue=4e-28,
Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=33.59375, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24644337, Length=256, Percent_Identity=33.59375, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI18859837, Length=136, Percent_Identity=36.0294117647059, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281364892, Length=193, Percent_Identity=31.6062176165803, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24580925, Length=204, Percent_Identity=28.4313725490196, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24641232, Length=203, Percent_Identity=30.5418719211823, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=27.0588235294118, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI116007236, Length=202, Percent_Identity=28.7128712871287, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281364494, Length=202, Percent_Identity=32.6732673267327, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24641388, Length=216, Percent_Identity=32.8703703703704, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24648693, Length=204, Percent_Identity=31.3725490196078, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355889, Length=204, Percent_Identity=31.3725490196078, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007234, Length=203, Percent_Identity=31.0344827586207, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24663911, Length=202, Percent_Identity=27.7227722772277, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 25094; Mature: 24962

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLTGKVAIVTGASKGIGAAIAKALADEGAAVVVNYASSKAGADAVVSAITEAGGRAVA
CCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEE
VGGDVSKAADAQRIVDTAIDTYGRLDVLVNNSGVYEFAPIEAITEEHYRRQFDTNVFGVL
ECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCHHHHHHHHHHHHHCCCCEEEE
LTTQAAVKHLGEGASIINISSVVTSITPPASAVYSGTKGAVDAITGVLALELGPRKIRVN
EHHHHHHHHHCCCCCEEEHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHEEEECCCEEEEE
AINPGMIVTEGTHSAGIIGSDLEAQVLGQTPLGRLGEPNDIASVAVFLASDDARWMTGEH
EECCCEEEECCCCCCCEECCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCEECCCE
LVVSGGLN
EEEECCCC
>Mature Secondary Structure 
SKLTGKVAIVTGASKGIGAAIAKALADEGAAVVVNYASSKAGADAVVSAITEAGGRAVA
CCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEE
VGGDVSKAADAQRIVDTAIDTYGRLDVLVNNSGVYEFAPIEAITEEHYRRQFDTNVFGVL
ECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCHHHHHHHHHHHHHCCCCEEEE
LTTQAAVKHLGEGASIINISSVVTSITPPASAVYSGTKGAVDAITGVLALELGPRKIRVN
EHHHHHHHHHCCCCCEEEHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHEEEECCCEEEEE
AINPGMIVTEGTHSAGIIGSDLEAQVLGQTPLGRLGEPNDIASVAVFLASDDARWMTGEH
EECCCEEEECCCCCCCEECCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCEECCCE
LVVSGGLN
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]