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The map label for this gene is yfdE [H]

Identifier: 116689430

GI number: 116689430

Start: 1552395

End: 1553615

Strand: Reverse

Name: yfdE [H]

Synonym: Bcen2424_1408

Alternate gene names: 116689430

Gene position: 1553615-1552395 (Counterclockwise)

Preceding gene: 116689432

Following gene: 116689427

Centisome position: 44.59

GC content: 69.94

Gene sequence:

>1221_bases
ATGGGTGCCCTGAGCCATATCCGCGTGCTGGACCTGACCCGCGTGCTCGCGGGCCCGTGGTGCGCGCAGACCCTTGCCGA
CTTCGGCGCGGACGTGATCAAGGTCGAGCGGCCGGGCGCCGGCGACGACACGCGCCACTGGGGGCCGCCGTACCTGAAGG
ACGCGGACGGCGCGGATACCGCCGAGGCCGCGTACTACCTCGCGGCGAACCGCAACAAGCGCTCGGTGACGATCGACATC
GCAACGCCCGAAGGGCAGCAAATCGTGCGCGAACTCGCCGCGCAGAGCGACGTCGTGCTCGAGAACTACAAGGTCGGGCA
ATTGAAGAAGTACGGGCTCGATTACGACTCGCTGCGGGCGGTGAAGCCCGATCTCGTCTACTGCTCGGTCACCGGCTTCG
GCCAGACCGGCCCGTACGCGCACCGCGCGGGCTACGACTTCATCGTGCAGGGGATCGGCGGCTTCATGAGCATCACCGGC
GAACGCGACGGCGAGCCGGGCGGCGGCCCGCAGAAGGCCGGCGTCGCGATCGCCGATCTCGCGACCGGCCTCTATTCGAC
GATCGCCGTGCTCGCCGCGCTCGCGCATCGCGACCGCACGGGCGAAGGCCAGTACATCGACATGGCGCTGCTCGACGTGC
AGGTCGCGCTGCTCGCGAACATGAACACCAACTTCCTCGCGAGCGGCAAGCCGCCGGTGCGCTGGGGCAACGCGCATCCG
AACATCGTGCCGTACCAGACGTTCCAGACGCGCGACGGCTGGATCATCGTCGCGGTCGGCAACGACGGGCAGTTCCGCAA
GTTCGTCGAGGCCGGCGGCCGGCCCGAGCTGGCCGACGACGAGCGCTTCGCGACGAACCCGTCGCGCGTGCGTCACCGCG
ACACGCTGGTGCCGATCCTCGCGGAGATGGTGAAGGCGCGCGGCAAGGCCGACTGGATCGGCGCGCTCGAAGCGGCCGGC
GTGCCGTGCGGGCCGATCAACGATCTCGACGAGGTGTTCGACAACGAGCAGGTGGTCGCGCGCGGGATGCAGGTGTCGCT
GCCGCACCCGTGCGGCGCGGACGTGAAGCTCGTGCGCAACCCGATCCGGATGAGCGCCACGCCGCCGGACGCGCGCACGG
CCCCGCCGCTACTCGGCGCGCAGACGGAAGACGTGCTGCGCGACATGCTCGGCTACGACGACGTGCGGATCGCCGCGTTG
AAGGCGAAACAGGCGATCTGA

Upstream 100 bases:

>100_bases
GCCTGGGCCACCCGCGCGGCCGATTCGCCTTAAGATGCTCGGCATGCCAATCGGCCTTGCCCGACAACGCAGGCCCGCCA
TGAAAGGAGACGATTCGACG

Downstream 100 bases:

>100_bases
CGCGATTCGGGTGACGGCATCGCGGCGGCTGCGAGCGCACGTGGCGTGCAACGACGGGATTACACGGCCGCGCCCCGCGC
ACGACAGCAGGCTGACTAAC

Product: Formyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MGALSHIRVLDLTRVLAGPWCAQTLADFGADVIKVERPGAGDDTRHWGPPYLKDADGADTAEAAYYLAANRNKRSVTIDI
ATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYDSLRAVKPDLVYCSVTGFGQTGPYAHRAGYDFIVQGIGGFMSITG
ERDGEPGGGPQKAGVAIADLATGLYSTIAVLAALAHRDRTGEGQYIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHP
NIVPYQTFQTRDGWIIVAVGNDGQFRKFVEAGGRPELADDERFATNPSRVRHRDTLVPILAEMVKARGKADWIGALEAAG
VPCGPINDLDEVFDNEQVVARGMQVSLPHPCGADVKLVRNPIRMSATPPDARTAPPLLGAQTEDVLRDMLGYDDVRIAAL
KAKQAI

Sequences:

>Translated_406_residues
MGALSHIRVLDLTRVLAGPWCAQTLADFGADVIKVERPGAGDDTRHWGPPYLKDADGADTAEAAYYLAANRNKRSVTIDI
ATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYDSLRAVKPDLVYCSVTGFGQTGPYAHRAGYDFIVQGIGGFMSITG
ERDGEPGGGPQKAGVAIADLATGLYSTIAVLAALAHRDRTGEGQYIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHP
NIVPYQTFQTRDGWIIVAVGNDGQFRKFVEAGGRPELADDERFATNPSRVRHRDTLVPILAEMVKARGKADWIGALEAAG
VPCGPINDLDEVFDNEQVVARGMQVSLPHPCGADVKLVRNPIRMSATPPDARTAPPLLGAQTEDVLRDMLGYDDVRIAAL
KAKQAI
>Mature_405_residues
GALSHIRVLDLTRVLAGPWCAQTLADFGADVIKVERPGAGDDTRHWGPPYLKDADGADTAEAAYYLAANRNKRSVTIDIA
TPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYDSLRAVKPDLVYCSVTGFGQTGPYAHRAGYDFIVQGIGGFMSITGE
RDGEPGGGPQKAGVAIADLATGLYSTIAVLAALAHRDRTGEGQYIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHPN
IVPYQTFQTRDGWIIVAVGNDGQFRKFVEAGGRPELADDERFATNPSRVRHRDTLVPILAEMVKARGKADWIGALEAAGV
PCGPINDLDEVFDNEQVVARGMQVSLPHPCGADVKLVRNPIRMSATPPDARTAPPLLGAQTEDVLRDMLGYDDVRIAALK
AKQAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=397, Percent_Identity=43.8287153652393, Blast_Score=358, Evalue=6e-99,
Organism=Homo sapiens, GI300863124, Length=423, Percent_Identity=41.1347517730496, Blast_Score=344, Evalue=1e-94,
Organism=Homo sapiens, GI300863126, Length=397, Percent_Identity=38.0352644836272, Blast_Score=295, Evalue=5e-80,
Organism=Homo sapiens, GI13376042, Length=423, Percent_Identity=37.5886524822695, Blast_Score=295, Evalue=5e-80,
Organism=Homo sapiens, GI266456254, Length=409, Percent_Identity=27.8728606356968, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI42794625, Length=409, Percent_Identity=27.8728606356968, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI266458397, Length=273, Percent_Identity=32.2344322344322, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI266458393, Length=273, Percent_Identity=32.2344322344322, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI266458395, Length=161, Percent_Identity=32.9192546583851, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI42822893, Length=161, Percent_Identity=32.9192546583851, Blast_Score=95, Evalue=1e-19,
Organism=Escherichia coli, GI87082093, Length=364, Percent_Identity=33.5164835164835, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI1788717, Length=428, Percent_Identity=32.0093457943925, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1786222, Length=421, Percent_Identity=23.7529691211401, Blast_Score=77, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=342, Percent_Identity=26.0233918128655, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=352, Percent_Identity=25, Blast_Score=88, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=47.6426799007444, Blast_Score=368, Evalue=1e-102,
Organism=Drosophila melanogaster, GI24585488, Length=347, Percent_Identity=27.9538904899135, Blast_Score=119, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43669; Mature: 43538

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGALSHIRVLDLTRVLAGPWCAQTLADFGADVIKVERPGAGDDTRHWGPPYLKDADGADT
CCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH
AEAAYYLAANRNKRSVTIDIATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYDSLRA
HHHEEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHC
VKPDLVYCSVTGFGQTGPYAHRAGYDFIVQGIGGFMSITGERDGEPGGGPQKAGVAIADL
CCCCEEEEEEECCCCCCCCHHHCCHHHHHHHCCCEEEECCCCCCCCCCCCHHHCCHHHHH
ATGLYSTIAVLAALAHRDRTGEGQYIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHP
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCC
NIVPYQTFQTRDGWIIVAVGNDGQFRKFVEAGGRPELADDERFATNPSRVRHRDTLVPIL
CEECCCEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AEMVKARGKADWIGALEAAGVPCGPINDLDEVFDNEQVVARGMQVSLPHPCGADVKLVRN
HHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHCCCEEECCCCCCCCHHHHCC
PIRMSATPPDARTAPPLLGAQTEDVLRDMLGYDDVRIAALKAKQAI
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHCC
>Mature Secondary Structure 
GALSHIRVLDLTRVLAGPWCAQTLADFGADVIKVERPGAGDDTRHWGPPYLKDADGADT
CCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH
AEAAYYLAANRNKRSVTIDIATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYDSLRA
HHHEEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHC
VKPDLVYCSVTGFGQTGPYAHRAGYDFIVQGIGGFMSITGERDGEPGGGPQKAGVAIADL
CCCCEEEEEEECCCCCCCCHHHCCHHHHHHHCCCEEEECCCCCCCCCCCCHHHCCHHHHH
ATGLYSTIAVLAALAHRDRTGEGQYIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHP
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCC
NIVPYQTFQTRDGWIIVAVGNDGQFRKFVEAGGRPELADDERFATNPSRVRHRDTLVPIL
CEECCCEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AEMVKARGKADWIGALEAAGVPCGPINDLDEVFDNEQVVARGMQVSLPHPCGADVKLVRN
HHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHCCCEEECCCCCCCCHHHHCC
PIRMSATPPDARTAPPLLGAQTEDVLRDMLGYDDVRIAALKAKQAI
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]