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The map label for this gene is ywbI [H]

Identifier: 116689385

GI number: 116689385

Start: 1501939

End: 1502829

Strand: Reverse

Name: ywbI [H]

Synonym: Bcen2424_1363

Alternate gene names: 116689385

Gene position: 1502829-1501939 (Counterclockwise)

Preceding gene: 116689388

Following gene: 116689379

Centisome position: 43.14

GC content: 71.72

Gene sequence:

>891_bases
ATGATCCGCGAACTGAAAACCCTCGTCGCCGTCGCCCGGGAAGGCACCTTTGCCGCCGCCGGCAATCGTATCGGGCTCAC
GCAGGCGGCCGTGAGCGCGCAGATGCAGCGCCTCGAGGCCGAGCTCGGCTTCGCGCTGTTCGACCGGCAAGGGCGTTCGG
CGCGGCTCAACGAGCGCGGCCATCACGTGCTCGACCAGGCGCAGGCGCTGATCGGCCTGTACGAGAACCTGAGCTCGACC
GCGCCCGGCTCGCCGGCCGCCGTGCGCGTGACGATCGGCGCGATCGCGTCGGTGCAGAGCGCGCTGCTGCCGGCCGCGCT
GGCCGATTTCCATCGCCGCCAACCCGCGTGCCGCACGCGCGTGATCCCGGGGCTGTCGATCGAGCTGGTCAACCGGGTCG
ACGCGGGCGAGATCGACATGGCCGCGATCATCCGGCCGCCGTTCGCGCTGCAGAGCGACCTGCACTGGACGACGCTCGCG
CGGGAGCCGTTCCGGCTGATCGTGCCGCGCGGCGTGAAAGGCAAGGACTGGGCTGCGCTGCTCGCGAACGCGCCGTTCGT
GCGCTACGACCGCGCGTCGTTCGGCGGCCGGCAGGTCGACCGCTTCCTGCGCAAGATGCACATCGCGGTGCGCGACACCT
GCGAACTCGACGAGCTCGACGCGATCGTCAAGCTGGTCGAGAACGGCGTCGGCGTCGCGATCGTGCCGCAGACCGCCGCG
TATCGTCGCTGGCCGGCTGGCGTGCGCGCGATCGACCTCGGGCATCACACGTTCCACCGCGACATCGGGCTCGTGCATCG
CGCGCGGCGCACGATGTCGGAGCCCGCGCAAGCGCTGGCGCAACTGATCGAGGCAGCATCGCGGCGGCGTTCACCGCCGC
CGGCCGCGTGA

Upstream 100 bases:

>100_bases
AAGAAACGCTCGCGTGACGCGAGAACGGCATCATGGTAGACAACGCCGAGCAAAAATTAAATCAATATATAGTTTTGCGA
TTCACAAATGGAATCGATGA

Downstream 100 bases:

>100_bases
TCGGCGCGTGGCGGCTCAGCGCCGCCCGGCCGCCCAGTCCACCGCTGCGTCGAACAGCGCGACACCGGCCGGCGACAGGT
TCGTGAACGTGTCGTTGTCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MIRELKTLVAVAREGTFAAAGNRIGLTQAAVSAQMQRLEAELGFALFDRQGRSARLNERGHHVLDQAQALIGLYENLSST
APGSPAAVRVTIGAIASVQSALLPAALADFHRRQPACRTRVIPGLSIELVNRVDAGEIDMAAIIRPPFALQSDLHWTTLA
REPFRLIVPRGVKGKDWAALLANAPFVRYDRASFGGRQVDRFLRKMHIAVRDTCELDELDAIVKLVENGVGVAIVPQTAA
YRRWPAGVRAIDLGHHTFHRDIGLVHRARRTMSEPAQALAQLIEAASRRRSPPPAA

Sequences:

>Translated_296_residues
MIRELKTLVAVAREGTFAAAGNRIGLTQAAVSAQMQRLEAELGFALFDRQGRSARLNERGHHVLDQAQALIGLYENLSST
APGSPAAVRVTIGAIASVQSALLPAALADFHRRQPACRTRVIPGLSIELVNRVDAGEIDMAAIIRPPFALQSDLHWTTLA
REPFRLIVPRGVKGKDWAALLANAPFVRYDRASFGGRQVDRFLRKMHIAVRDTCELDELDAIVKLVENGVGVAIVPQTAA
YRRWPAGVRAIDLGHHTFHRDIGLVHRARRTMSEPAQALAQLIEAASRRRSPPPAA
>Mature_296_residues
MIRELKTLVAVAREGTFAAAGNRIGLTQAAVSAQMQRLEAELGFALFDRQGRSARLNERGHHVLDQAQALIGLYENLSST
APGSPAAVRVTIGAIASVQSALLPAALADFHRRQPACRTRVIPGLSIELVNRVDAGEIDMAAIIRPPFALQSDLHWTTLA
REPFRLIVPRGVKGKDWAALLANAPFVRYDRASFGGRQVDRFLRKMHIAVRDTCELDELDAIVKLVENGVGVAIVPQTAA
YRRWPAGVRAIDLGHHTFHRDIGLVHRARRTMSEPAQALAQLIEAASRRRSPPPAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=292, Percent_Identity=28.0821917808219, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787806, Length=246, Percent_Identity=23.9837398373984, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787601, Length=145, Percent_Identity=26.8965517241379, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787879, Length=252, Percent_Identity=26.5873015873016, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1788481, Length=255, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693105, Length=294, Percent_Identity=23.1292517006803, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790262, Length=170, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788887, Length=169, Percent_Identity=27.810650887574, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788626, Length=176, Percent_Identity=31.25, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32307; Mature: 32307

Theoretical pI: Translated: 11.20; Mature: 11.20

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRELKTLVAVAREGTFAAAGNRIGLTQAAVSAQMQRLEAELGFALFDRQGRSARLNERG
CHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
HHVLDQAQALIGLYENLSSTAPGSPAAVRVTIGAIASVQSALLPAALADFHRRQPACRTR
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
VIPGLSIELVNRVDAGEIDMAAIIRPPFALQSDLHWTTLAREPFRLIVPRGVKGKDWAAL
CCCCCHHHHHHCCCCCCCCHHHHCCCCHHHCCCCCHHHHCCCCEEEECCCCCCCCHHHHH
LANAPFVRYDRASFGGRQVDRFLRKMHIAVRDTCELDELDAIVKLVENGVGVAIVPQTAA
HHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCHHH
YRRWPAGVRAIDLGHHTFHRDIGLVHRARRTMSEPAQALAQLIEAASRRRSPPPAA
HHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIRELKTLVAVAREGTFAAAGNRIGLTQAAVSAQMQRLEAELGFALFDRQGRSARLNERG
CHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
HHVLDQAQALIGLYENLSSTAPGSPAAVRVTIGAIASVQSALLPAALADFHRRQPACRTR
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
VIPGLSIELVNRVDAGEIDMAAIIRPPFALQSDLHWTTLAREPFRLIVPRGVKGKDWAAL
CCCCCHHHHHHCCCCCCCCHHHHCCCCHHHCCCCCHHHHCCCCEEEECCCCCCCCHHHHH
LANAPFVRYDRASFGGRQVDRFLRKMHIAVRDTCELDELDAIVKLVENGVGVAIVPQTAA
HHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCHHH
YRRWPAGVRAIDLGHHTFHRDIGLVHRARRTMSEPAQALAQLIEAASRRRSPPPAA
HHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]