Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689258
Identifier: 116689258
GI number: 116689258
Start: 1366503
End: 1367123
Strand: Reverse
Name: 116689258
Synonym: Bcen2424_1236
Alternate gene names: NA
Gene position: 1367123-1366503 (Counterclockwise)
Preceding gene: 116689259
Following gene: 116689257
Centisome position: 39.24
GC content: 61.67
Gene sequence:
>621_bases ATGGCGACGCCGCACAAACAAAAAACCCGCGAGCGCTGCATTTCTCGCGGGTTTTTCACACCTTCATCGAATCGAATCGC ATCAACGCAATCGATGGTGCCGGGGACCGGACTCGAACCGGCAAGCCAGTTAAGGCGGCGGATTTTCGTCACACTGCTTC TTTCAAAGCCGGCGTCGCGTGCGCGAACCGTTCGTGCGCTGGACTATGCCTTCACCGTCGCGCGCGGGCGTGACCGCTGC CCGTGCGCCTTAGGCGCCCCCCGTCTAGTCTCTACACCTTCCTCGCGGATGCCGCGAGGCTTGGCTCGGCGTTGCCTCGA TGCGCGCATCAGGGGTTTCGCCGAATTTGAAGGGTTCTGCACCGACCGTTTCCGGCCGGGCACTCAATCGTTTAAGTCCG CTATGTTTACCAATTTCATCACCCCGGCAAGAGGGCGGACGCGATTCTACCATTGCTTGCGCATGCGTTCCCCTTATTCC CCGCACCGCATCGCGACACCGGCCATCGCAGCATCGCCTCCTCCCTCGCATTCAACGCCGATACGACACCGATGCCACAC GGCCGACGATTTCGTCCCACGCCGCCACCTCCGCCGATACAATCGACCGCGCGTCGTCTGA
Upstream 100 bases:
>100_bases ACGGGCAGGTCTGGGGCGCGGACGGCGGGCTGGGAATTTTCTGACACGCGACAAGCCGCGATATTTTTCATGTCCCGGCC GGCGTCGCAGCCTCGCCTCG
Downstream 100 bases:
>100_bases CCACCTCAACCGTCTGACGTTTGTGTCGTGCTTTTCGCGAAACAAGCGTCGCGCGCGTCATCGCGAAGTCACAAACGTTT TCGATAATTCCCCGGCCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 206; Mature: 205
Protein sequence:
>206_residues MATPHKQKTRERCISRGFFTPSSNRIASTQSMVPGTGLEPASQLRRRIFVTLLLSKPASRARTVRALDYAFTVARGRDRC PCALGAPRLVSTPSSRMPRGLARRCLDARIRGFAEFEGFCTDRFRPGTQSFKSAMFTNFITPARGRTRFYHCLRMRSPYS PHRIATPAIAASPPPSHSTPIRHRCHTADDFVPRRHLRRYNRPRVV
Sequences:
>Translated_206_residues MATPHKQKTRERCISRGFFTPSSNRIASTQSMVPGTGLEPASQLRRRIFVTLLLSKPASRARTVRALDYAFTVARGRDRC PCALGAPRLVSTPSSRMPRGLARRCLDARIRGFAEFEGFCTDRFRPGTQSFKSAMFTNFITPARGRTRFYHCLRMRSPYS PHRIATPAIAASPPPSHSTPIRHRCHTADDFVPRRHLRRYNRPRVV >Mature_205_residues ATPHKQKTRERCISRGFFTPSSNRIASTQSMVPGTGLEPASQLRRRIFVTLLLSKPASRARTVRALDYAFTVARGRDRCP CALGAPRLVSTPSSRMPRGLARRCLDARIRGFAEFEGFCTDRFRPGTQSFKSAMFTNFITPARGRTRFYHCLRMRSPYSP HRIATPAIAASPPPSHSTPIRHRCHTADDFVPRRHLRRYNRPRVV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23396; Mature: 23265
Theoretical pI: Translated: 12.31; Mature: 12.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATPHKQKTRERCISRGFFTPSSNRIASTQSMVPGTGLEPASQLRRRIFVTLLLSKPASR CCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHH ARTVRALDYAFTVARGRDRCPCALGAPRLVSTPSSRMPRGLARRCLDARIRGFAEFEGFC HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH TDRFRPGTQSFKSAMFTNFITPARGRTRFYHCLRMRSPYSPHRIATPAIAASPPPSHSTP HCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC IRHRCHTADDFVPRRHLRRYNRPRVV HHHHCCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure ATPHKQKTRERCISRGFFTPSSNRIASTQSMVPGTGLEPASQLRRRIFVTLLLSKPASR CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHH ARTVRALDYAFTVARGRDRCPCALGAPRLVSTPSSRMPRGLARRCLDARIRGFAEFEGFC HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH TDRFRPGTQSFKSAMFTNFITPARGRTRFYHCLRMRSPYSPHRIATPAIAASPPPSHSTP HCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC IRHRCHTADDFVPRRHLRRYNRPRVV HHHHCCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA