BacMap

Definition	Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession	NC_008542
Length	3,483,902

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The map label for this gene is yhxD [H]

Identifier: 116689259

GI number: 116689259

Start: 1367180

End: 1368166

Strand: Reverse

Name: yhxD [H]

Synonym: Bcen2424_1237

Alternate gene names: 116689259

Gene position: 1368166-1367180 (Counterclockwise)

Preceding gene: 116689260

Following gene: 116689258

Centisome position: 39.27

GC content: 68.09

Gene sequence:

>987_bases
ATGCGCGTCTCGCGCCGACAGGTCATCGGCAATCTTGGCGCACTGGCTGCGATGTCCGCACTCGGTCCGTCCGCCGCGCA
TGCCGTCGACGCGCCGCCAGCCGCGGAGAGCCTGACGAATCCGGTCGGCTTGTACCCGAAGCCGCCGTTCCCGCATCAGG
TCCAGGCGCCGCCGGGACTCGCGAGCCGGATGCAGCCGCGCCCCGACCACGGCGAGCAAAGCTATCGCGGCCGTGGCCGG
CTCGTCGGCCGCAAGGCCCTCGTCACCGGCGGCGACTCGGGCATCGGCAGGGCAGCAGCCATTGCGTTCGCGCGCGAAGG
GGCGGACGTCGCGATCGGCTATCTCCCCGTCGAGGAATCCGATGCGCGGGAAGTCGTGGCGTTGATCCGGGCAGCAGGAC
GCAAAGCCGTCGCGCTGCCCGGCGACATCCGCGACGAAGCGTTCTGCCAGCGGCTGGTCGCACGCGCGGCGGCGGAACTC
GGCGGGATCGACATTCTCGTCAACAACGCCGCCCGACAACAGGCGCTCGATTCGATCGACGAGATGACGACCGAGCATTT
CGATGCAACGATCAAGACCAATCTTTACGGGATGTTCTGGATCACGAAGGCGGCCATCCCGCATCTTCCGCCCGGCGCGT
CGATCATCAACACCACGTCGGTCCAGGCAGTCAGGGCGAGCGCCAACCTGCTCGACTATGCGACGACGAAAGCCGGCATC
ATCGCGTTCACCCGATCGCTCGCGAAGCAGCTCGGGCCGCATGGCATTCGCGTCAATGCAGTCGCTCCCGGCCCCTACTG
GACCCCGCTGCAATCGAGCGGCGGCCAGCCACCGGAGACGGTCGTCAACTATGCGGCGGGCTCGCCGTACGGCAGGCCGG
GACAACCGGCCGAAATCGCCCCGCTGTATGTCGCGCTCGCCTCGTCGGAAACGAGCTATGCGAACGGGCAGGTCTGGGGC
GCGGACGGCGGGCTGGGAATTTTCTGA

Upstream 100 bases:

>100_bases
GCCGTATGGCGATCACCCACTTTCGCGCGGACGACCCGGAGCACGACGCGCGATTTCGCTCACGGAGCATCCGTTGAAAG
ACGACGATAACGAAGCAGGC

Downstream 100 bases:

>100_bases
CACGCGACAAGCCGCGATATTTTTCATGTCCCGGCCGGCGTCGCAGCCTCGCCTCGATGGCGACGCCGCACAAACAAAAA
ACCCGCGAGCGCTGCATTTC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFY [H]

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MRVSRRQVIGNLGALAAMSALGPSAAHAVDAPPAAESLTNPVGLYPKPPFPHQVQAPPGLASRMQPRPDHGEQSYRGRGR
LVGRKALVTGGDSGIGRAAAIAFAREGADVAIGYLPVEESDAREVVALIRAAGRKAVALPGDIRDEAFCQRLVARAAAEL
GGIDILVNNAARQQALDSIDEMTTEHFDATIKTNLYGMFWITKAAIPHLPPGASIINTTSVQAVRASANLLDYATTKAGI
IAFTRSLAKQLGPHGIRVNAVAPGPYWTPLQSSGGQPPETVVNYAAGSPYGRPGQPAEIAPLYVALASSETSYANGQVWG
ADGGLGIF

Sequences:

>Translated_328_residues
MRVSRRQVIGNLGALAAMSALGPSAAHAVDAPPAAESLTNPVGLYPKPPFPHQVQAPPGLASRMQPRPDHGEQSYRGRGR
LVGRKALVTGGDSGIGRAAAIAFAREGADVAIGYLPVEESDAREVVALIRAAGRKAVALPGDIRDEAFCQRLVARAAAEL
GGIDILVNNAARQQALDSIDEMTTEHFDATIKTNLYGMFWITKAAIPHLPPGASIINTTSVQAVRASANLLDYATTKAGI
IAFTRSLAKQLGPHGIRVNAVAPGPYWTPLQSSGGQPPETVVNYAAGSPYGRPGQPAEIAPLYVALASSETSYANGQVWG
ADGGLGIF
>Mature_328_residues
MRVSRRQVIGNLGALAAMSALGPSAAHAVDAPPAAESLTNPVGLYPKPPFPHQVQAPPGLASRMQPRPDHGEQSYRGRGR
LVGRKALVTGGDSGIGRAAAIAFAREGADVAIGYLPVEESDAREVVALIRAAGRKAVALPGDIRDEAFCQRLVARAAAEL
GGIDILVNNAARQQALDSIDEMTTEHFDATIKTNLYGMFWITKAAIPHLPPGASIINTTSVQAVRASANLLDYATTKAGI
IAFTRSLAKQLGPHGIRVNAVAPGPYWTPLQSSGGQPPETVVNYAAGSPYGRPGQPAEIAPLYVALASSETSYANGQVWG
ADGGLGIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=32.046332046332, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI32483357, Length=268, Percent_Identity=29.8507462686567, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=31.7829457364341, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=33.6, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI59889578, Length=218, Percent_Identity=31.651376146789, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI19923817, Length=264, Percent_Identity=29.5454545454545, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=33.596837944664, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=31.5573770491803, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=30.3149606299213, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI83715985, Length=258, Percent_Identity=29.4573643410853, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI5031737, Length=241, Percent_Identity=27.3858921161826, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI4504505, Length=195, Percent_Identity=32.3076923076923, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=31.1475409836066, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI40254986, Length=235, Percent_Identity=29.3617021276596, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=27.3809523809524, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=29.1666666666667, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI4503301, Length=196, Percent_Identity=30.1020408163265, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=29.2929292929293, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI210032110, Length=194, Percent_Identity=27.8350515463918, Blast_Score=69, Evalue=7e-12,
Organism=Escherichia coli, GI1789378, Length=287, Percent_Identity=54.7038327526132, Blast_Score=313, Evalue=1e-86,
Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=34.765625, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=32.7935222672065, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=35.7142857142857, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=31.3008130081301, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=33.8775510204082, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=32.9317269076305, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=26.7206477732794, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=32.5301204819277, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=29.3172690763052, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=27.843137254902, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787545, Length=259, Percent_Identity=27.4131274131274, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787526, Length=251, Percent_Identity=27.0916334661355, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=33.7164750957854, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=34.2629482071713, Blast_Score=115, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=34.2307692307692, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI71994604, Length=261, Percent_Identity=31.8007662835249, Blast_Score=110, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI71994600, Length=260, Percent_Identity=30.7692307692308, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=32.183908045977, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=32.8301886792453, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=34.6153846153846, Blast_Score=104, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=33.206106870229, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=33.7121212121212, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=31.5384615384615, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=30.952380952381, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=30.6818181818182, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=34.2205323193916, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=32.5581395348837, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=281, Percent_Identity=29.1814946619217, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=30.3846153846154, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=31.4393939393939, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=31.3953488372093, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI71982365, Length=215, Percent_Identity=32.093023255814, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=32.9545454545455, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=32.0754716981132, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=27.1698113207547, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17538182, Length=259, Percent_Identity=32.046332046332, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=27.9352226720648, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=30.5970149253731, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17561272, Length=257, Percent_Identity=32.295719844358, Blast_Score=81, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17565030, Length=260, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17568967, Length=212, Percent_Identity=29.2452830188679, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=191, Percent_Identity=27.7486910994764, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=194, Percent_Identity=27.8350515463918, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=193, Percent_Identity=27.979274611399, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=260, Percent_Identity=27.6923076923077, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17558628, Length=203, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508651, Length=258, Percent_Identity=26.3565891472868, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=26.9076305220884, Blast_Score=68, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6322861, Length=189, Percent_Identity=29.1005291005291, Blast_Score=73, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6323882, Length=214, Percent_Identity=27.5700934579439, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=35.8870967741936, Blast_Score=133, Evalue=2e-31,
Organism=Drosophila melanogaster, GI21357041, Length=245, Percent_Identity=35.1020408163265, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI28571526, Length=244, Percent_Identity=35.2459016393443, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=34.9397590361446, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=34.6456692913386, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=30.4, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24644337, Length=253, Percent_Identity=34.3873517786561, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=31.5175097276265, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=30.3643724696356, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21357673, Length=198, Percent_Identity=29.7979797979798, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI18859837, Length=254, Percent_Identity=29.1338582677165, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355631, Length=178, Percent_Identity=33.1460674157303, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI161076933, Length=194, Percent_Identity=25.7731958762887, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24584748, Length=194, Percent_Identity=25.7731958762887, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 34123; Mature: 34123

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVSRRQVIGNLGALAAMSALGPSAAHAVDAPPAAESLTNPVGLYPKPPFPHQVQAPPGL
CCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCH
ASRMQPRPDHGEQSYRGRGRLVGRKALVTGGDSGIGRAAAIAFAREGADVAIGYLPVEES
HHCCCCCCCCCCCCCCCCCEEEECEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCC
DAREVVALIRAAGRKAVALPGDIRDEAFCQRLVARAAAELGGIDILVNNAARQQALDSID
CHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHH
EMTTEHFDATIKTNLYGMFWITKAAIPHLPPGASIINTTSVQAVRASANLLDYATTKAGI
HHHHHHHCEEEECCEEEEEEEHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHH
IAFTRSLAKQLGPHGIRVNAVAPGPYWTPLQSSGGQPPETVVNYAAGSPYGRPGQPAEIA
HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
PLYVALASSETSYANGQVWGADGGLGIF
EEEEEEECCCCCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MRVSRRQVIGNLGALAAMSALGPSAAHAVDAPPAAESLTNPVGLYPKPPFPHQVQAPPGL
CCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCH
ASRMQPRPDHGEQSYRGRGRLVGRKALVTGGDSGIGRAAAIAFAREGADVAIGYLPVEES
HHCCCCCCCCCCCCCCCCCEEEECEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCC
DAREVVALIRAAGRKAVALPGDIRDEAFCQRLVARAAAELGGIDILVNNAARQQALDSID
CHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHH
EMTTEHFDATIKTNLYGMFWITKAAIPHLPPGASIINTTSVQAVRASANLLDYATTKAGI
HHHHHHHCEEEECCEEEEEEEHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHH
IAFTRSLAKQLGPHGIRVNAVAPGPYWTPLQSSGGQPPETVVNYAAGSPYGRPGQPAEIA
HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
PLYVALASSETSYANGQVWGADGGLGIF
EEEEEEECCCCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 8196543 [H]