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The map label for this gene is potC [C]

Identifier: 116689254

GI number: 116689254

Start: 1362491

End: 1363393

Strand: Reverse

Name: potC [C]

Synonym: Bcen2424_1232

Alternate gene names: 116689254

Gene position: 1363393-1362491 (Counterclockwise)

Preceding gene: 116689255

Following gene: 116689253

Centisome position: 39.13

GC content: 69.66

Gene sequence:

>903_bases
ATGACATCGCTTTCCGGCTCTTCCGCGCCCTCCCCGGCACCTGTGCCGGCTTCCCTGCCAGCGAAACCTGCCGCCCGGCA
CGCGCCGCGGGTCGCCGGTGCACGCGCGATCGCCGCGCTGCAATGGGGCGTCACGCTGCTGCTGTGCGCGTTCCTGATCG
TGCCCGTCGTGATGTCGGTGCTCGCGGGGCTAACCGTCAACTATTTCCGCGGCCTGTCGAGCGGCCTCACGCTGCGCTGG
CTCGAGCAGGTGTGGCAGCAGTATCACGGCTCGGTCGCGCTGTCGCTCTACGTCGCGTTCGCGACGCTCGCGATCGTGCT
CGCGGTCGGCGTGCCGGCCGGCTATGCGCTCGCGCGCAGCAAGAGCCGCATCGCGCGTGCGATCGAGGAAGCGCTCGTGC
TGCCGGTCGCGCTGCCGGGGCTGGCTTCGGCGCTCGCGCTGCTGGTCGTGTACGGCGGCTTCACCGCGTTCCGGATGAGC
CTGTGGTTCATCGTCGTCGGCCACGTCGTGTTCACGCTGCCATTCATGGTGCGCGCGGTCGCGGCCGTCGCGGCCAGCGC
CGACCTGCGCACGCTCGAGGAAGGCGCGGCGAGCCTCGGCGCATCGTTCGTCACGCGCTTCGTCACGATCGTGCTGCCGA
ACCTGCGGCCCGGCATCGTCGCCGGTGCGCTCGCGGTGCTCACGCTGTCGATCGGCGAATTCAACCTCACCTGGATGCTG
CATACGCCCGACACCAAGACGCTGCCGGTCGGGCTTGCCGACACGTATGCGTCGCTGCGCCTCGAAGTCGGCAGCGCGTA
CACGATCCTGTTCCTGCTGATGACGCTGCCGCTGCTCGTCGCGATGCAATGGCTCGGCGTCGATCCGTCCGGTACGCGTG
CGCTGAAGAAGCGCCCACGCTGA

Upstream 100 bases:

>100_bases
GGCCTGTCGATCGTGCTCGGCGTCGTCACCTGGGCCGTGCTCGCGCTCGCACGACGCTTCACCGGTCACACCGCCGCCGC
CGCGGCCTGAGGAATTCCGC

Downstream 100 bases:

>100_bases
CTTTTCCTGCAGACATGAAACTCGATTCCACTCCCATCACCCTGACCGGCTGCGCGAAGACGTTCCGCGGTACACGCGTG
CTCGAACCGCTCGACCTGTC

Product: binding-protein-dependent transport systems inner membrane component

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: ABC Spermidine/Putrescine Transporter Permease Protein; ABC-Type Transporter Permease Component; ABC TRANSPORTER Membrane Component; Spermidine/Putrescine ABC Transporter Permease; ABC Transporter Inner Membrane Protein; ABC Transport System Permease Component; Molybdenum ABC Transporter Permease; ABC Transporter Membrane Component; ABC Transporter Membrane Protein; ABC Transporter Permease; Permease Protein; ABC Polyamine Transporter Inner Membrane Subunit

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MTSLSGSSAPSPAPVPASLPAKPAARHAPRVAGARAIAALQWGVTLLLCAFLIVPVVMSVLAGLTVNYFRGLSSGLTLRW
LEQVWQQYHGSVALSLYVAFATLAIVLAVGVPAGYALARSKSRIARAIEEALVLPVALPGLASALALLVVYGGFTAFRMS
LWFIVVGHVVFTLPFMVRAVAAVAASADLRTLEEGAASLGASFVTRFVTIVLPNLRPGIVAGALAVLTLSIGEFNLTWML
HTPDTKTLPVGLADTYASLRLEVGSAYTILFLLMTLPLLVAMQWLGVDPSGTRALKKRPR

Sequences:

>Translated_300_residues
MTSLSGSSAPSPAPVPASLPAKPAARHAPRVAGARAIAALQWGVTLLLCAFLIVPVVMSVLAGLTVNYFRGLSSGLTLRW
LEQVWQQYHGSVALSLYVAFATLAIVLAVGVPAGYALARSKSRIARAIEEALVLPVALPGLASALALLVVYGGFTAFRMS
LWFIVVGHVVFTLPFMVRAVAAVAASADLRTLEEGAASLGASFVTRFVTIVLPNLRPGIVAGALAVLTLSIGEFNLTWML
HTPDTKTLPVGLADTYASLRLEVGSAYTILFLLMTLPLLVAMQWLGVDPSGTRALKKRPR
>Mature_299_residues
TSLSGSSAPSPAPVPASLPAKPAARHAPRVAGARAIAALQWGVTLLLCAFLIVPVVMSVLAGLTVNYFRGLSSGLTLRWL
EQVWQQYHGSVALSLYVAFATLAIVLAVGVPAGYALARSKSRIARAIEEALVLPVALPGLASALALLVVYGGFTAFRMSL
WFIVVGHVVFTLPFMVRAVAAVAASADLRTLEEGAASLGASFVTRFVTIVLPNLRPGIVAGALAVLTLSIGEFNLTWMLH
TPDTKTLPVGLADTYASLRLEVGSAYTILFLLMTLPLLVAMQWLGVDPSGTRALKKRPR

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. [C]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787368, Length=228, Percent_Identity=27.1929824561404, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31582; Mature: 31451

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLSGSSAPSPAPVPASLPAKPAARHAPRVAGARAIAALQWGVTLLLCAFLIVPVVMSV
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGLTVNYFRGLSSGLTLRWLEQVWQQYHGSVALSLYVAFATLAIVLAVGVPAGYALARS
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
KSRIARAIEEALVLPVALPGLASALALLVVYGGFTAFRMSLWFIVVGHVVFTLPFMVRAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVAASADLRTLEEGAASLGASFVTRFVTIVLPNLRPGIVAGALAVLTLSIGEFNLTWML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
HTPDTKTLPVGLADTYASLRLEVGSAYTILFLLMTLPLLVAMQWLGVDPSGTRALKKRPR
ECCCCCEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCC
>Mature Secondary Structure 
TSLSGSSAPSPAPVPASLPAKPAARHAPRVAGARAIAALQWGVTLLLCAFLIVPVVMSV
CCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGLTVNYFRGLSSGLTLRWLEQVWQQYHGSVALSLYVAFATLAIVLAVGVPAGYALARS
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
KSRIARAIEEALVLPVALPGLASALALLVVYGGFTAFRMSLWFIVVGHVVFTLPFMVRAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVAASADLRTLEEGAASLGASFVTRFVTIVLPNLRPGIVAGALAVLTLSIGEFNLTWML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
HTPDTKTLPVGLADTYASLRLEVGSAYTILFLLMTLPLLVAMQWLGVDPSGTRALKKRPR
ECCCCCEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA