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The map label for this gene is ccsA [H]

Identifier: 116622283

GI number: 116622283

Start: 4025553

End: 4026374

Strand: Direct

Name: ccsA [H]

Synonym: Acid_3177

Alternate gene names: 116622283

Gene position: 4025553-4026374 (Clockwise)

Preceding gene: 116622280

Following gene: 116622284

Centisome position: 40.39

GC content: 59.85

Gene sequence:

>822_bases
ATGGCTGAAATGAGCGTCATCTGGCTGCGCGTGGCCGCCGCGTTTTATTCGCTCGGTCTGCTGCATGCCATCCTAACCCT
GGTACGCCGCCGCGAACATCTGTTCCGGGTGGCGCTGACGGCATTTACCATCGGGGGGGTCTTCCATTTTGTCTCGATCG
TGGAGGAAGGCATCATCAATAACCGGTGCCCAATCACGAACTTCTACGAGACGCTTTCCATGTGCGCGTTCCTGGTGGGG
ATCGGATTTATCGCCGTCCATCTGCGCTACCGCGTGGAGAGCTTGAGCGTGTTCATATTCCCGCTGGTGTTTGTGATGGC
GCTGGTGGCGACGATGGGGAATCCGGTGAGCGCGTGGAGCAGCCCGATTGTGCGCAACGCTTGGCTGACGGTGCACATTG
TTCTGGTGCTGCTGGGTTACGCCGCGCTGCTGTTCACGGCGGTGGCGAGTCTGCTGTACCTGTTCCAGGAGCGCGAGCTA
AAGAGCAAGAAGCCGAGCAAGTTCTATTACCGCCTGCCGCCGCTGGGCACGCTGGACGAGTTGATGTCCAAGTTCATGAC
GCTCGGGTTCGTGCTGATCACGCTGGCGGTGATCGCGGGCAGCACGTGGGCGTTTATCGAGTTGAAGGCCGATTGGATCC
GGCAGCCGAAGATTGCAATTTCCTTTTTCACATGGGGAGTTTATTTTGCGCTGGTATGCCTGCGTGTTACCGCAGGCTGG
CGCGGGCGCAAGGCCGCCCTTATGACGATCGCGGTAGTCGGGTTCTCGGCGCTGACCTGGGCGGCGCACGCGAGGCTCGG
CAGTTTGCTGCTTAAGCCATGA

Upstream 100 bases:

>100_bases
ACGCACAATCGATGCCCCTTACCCCCATTGGCGGTGGCATTCGGAGAGAGGTGGGCACGATATACTGTGATTTAAGAGTC
TTACGTTCCGATAAACGCCC

Downstream 100 bases:

>100_bases
AACTCCTGATCACAGGCGTAAGCCACAAAACGGCGCCGGTGGAAGTCCGCGAATGCCTGGCATTCCGGGAGGAGACGCTG
CCCGCGGCGCTGGCCGATCT

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MAEMSVIWLRVAAAFYSLGLLHAILTLVRRREHLFRVALTAFTIGGVFHFVSIVEEGIINNRCPITNFYETLSMCAFLVG
IGFIAVHLRYRVESLSVFIFPLVFVMALVATMGNPVSAWSSPIVRNAWLTVHIVLVLLGYAALLFTAVASLLYLFQEREL
KSKKPSKFYYRLPPLGTLDELMSKFMTLGFVLITLAVIAGSTWAFIELKADWIRQPKIAISFFTWGVYFALVCLRVTAGW
RGRKAALMTIAVVGFSALTWAAHARLGSLLLKP

Sequences:

>Translated_273_residues
MAEMSVIWLRVAAAFYSLGLLHAILTLVRRREHLFRVALTAFTIGGVFHFVSIVEEGIINNRCPITNFYETLSMCAFLVG
IGFIAVHLRYRVESLSVFIFPLVFVMALVATMGNPVSAWSSPIVRNAWLTVHIVLVLLGYAALLFTAVASLLYLFQEREL
KSKKPSKFYYRLPPLGTLDELMSKFMTLGFVLITLAVIAGSTWAFIELKADWIRQPKIAISFFTWGVYFALVCLRVTAGW
RGRKAALMTIAVVGFSALTWAAHARLGSLLLKP
>Mature_272_residues
AEMSVIWLRVAAAFYSLGLLHAILTLVRRREHLFRVALTAFTIGGVFHFVSIVEEGIINNRCPITNFYETLSMCAFLVGI
GFIAVHLRYRVESLSVFIFPLVFVMALVATMGNPVSAWSSPIVRNAWLTVHIVLVLLGYAALLFTAVASLLYLFQERELK
SKKPSKFYYRLPPLGTLDELMSKFMTLGFVLITLAVIAGSTWAFIELKADWIRQPKIAISFFTWGVYFALVCLRVTAGWR
GRKAALMTIAVVGFSALTWAAHARLGSLLLKP

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30528; Mature: 30397

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEMSVIWLRVAAAFYSLGLLHAILTLVRRREHLFRVALTAFTIGGVFHFVSIVEEGIIN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NRCPITNFYETLSMCAFLVGIGFIAVHLRYRVESLSVFIFPLVFVMALVATMGNPVSAWS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC
SPIVRNAWLTVHIVLVLLGYAALLFTAVASLLYLFQERELKSKKPSKFYYRLPPLGTLDE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHH
LMSKFMTLGFVLITLAVIAGSTWAFIELKADWIRQPKIAISFFTWGVYFALVCLRVTAGW
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
RGRKAALMTIAVVGFSALTWAAHARLGSLLLKP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AEMSVIWLRVAAAFYSLGLLHAILTLVRRREHLFRVALTAFTIGGVFHFVSIVEEGIIN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NRCPITNFYETLSMCAFLVGIGFIAVHLRYRVESLSVFIFPLVFVMALVATMGNPVSAWS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC
SPIVRNAWLTVHIVLVLLGYAALLFTAVASLLYLFQERELKSKKPSKFYYRLPPLGTLDE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHH
LMSKFMTLGFVLITLAVIAGSTWAFIELKADWIRQPKIAISFFTWGVYFALVCLRVTAGW
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
RGRKAALMTIAVVGFSALTWAAHARLGSLLLKP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA