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The map label for this gene is 116622239

Identifier: 116622239

GI number: 116622239

Start: 3971995

End: 3972585

Strand: Direct

Name: 116622239

Synonym: Acid_3132

Alternate gene names: NA

Gene position: 3971995-3972585 (Clockwise)

Preceding gene: 116622238

Following gene: 116622240

Centisome position: 39.86

GC content: 59.56

Gene sequence:

>591_bases
ATGCCAGGGGAAACACCGAGTACCAGTTCGGCCGCCGACGTCTCATGGACTGACAGCCAATTAGTTACAGAGTGTCTCAG
TGGCAACGAATGCGCATGGACGGCCCTGATTGACAAGTACAAGAATCTGATTTTCTCGATCCCGATCCGCCGGGGATTTT
CGCGCAGCGATGCCACCGACATCTTTCAGGAGGTGGCGGCGCAGTTACTTTCGGAATTGACGCGCATTCGGAAGCCGGAA
GCCCTGGCGGCGTGGTTGATCCAAGTTACCTCAAATAGATGCACGCGGTGGCAGACCCTTGCGTCCCGGGAAGGCGGCGG
CACCGATGAAGTGTTGGCCTCCTCGATAAATCGGGAGACAGCGGAGAACCTGGTGCTGGAGGCGGAACGGGAGCAGGCCC
TGCGCAGCGCGGTGCAGCTGGCGACACCGCAGTGCCGGCAGTTAATCCGAATGCTCTTTTTCGAGAATCCGCCGCTACCT
TACCAGGAGGTGGCAGCTGGCCTGGGGATCGTCACCGGGTCGATCGGCTTTGTGCGCAGGAAATGCCTGGACCGGTTGCG
AAGCCATCTTGAAGAAGCGGGCTTCCGATGA

Upstream 100 bases:

>100_bases
GGCAGCCCACTAACTTTAGTACTGGAAAACCCTGGACCCACCCCTCCAAAGTGATTATTATTGGACTACAAAGGCGCAGC
GCAGTGTGCCGCGAGGGTAG

Downstream 100 bases:

>100_bases
GCGAAGAGGCCGGCAACTCCGAGCGGTCAGCATTACTATTCGACCTGGCGCAGGCAGCGGGTGATCCCGAAACCGGCATC
GCCCGGATCACGGAGATCCT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; Sigma-70 Region 2 Domain-Containing Protein; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MPGETPSTSSAADVSWTDSQLVTECLSGNECAWTALIDKYKNLIFSIPIRRGFSRSDATDIFQEVAAQLLSELTRIRKPE
ALAAWLIQVTSNRCTRWQTLASREGGGTDEVLASSINRETAENLVLEAEREQALRSAVQLATPQCRQLIRMLFFENPPLP
YQEVAAGLGIVTGSIGFVRRKCLDRLRSHLEEAGFR

Sequences:

>Translated_196_residues
MPGETPSTSSAADVSWTDSQLVTECLSGNECAWTALIDKYKNLIFSIPIRRGFSRSDATDIFQEVAAQLLSELTRIRKPE
ALAAWLIQVTSNRCTRWQTLASREGGGTDEVLASSINRETAENLVLEAEREQALRSAVQLATPQCRQLIRMLFFENPPLP
YQEVAAGLGIVTGSIGFVRRKCLDRLRSHLEEAGFR
>Mature_195_residues
PGETPSTSSAADVSWTDSQLVTECLSGNECAWTALIDKYKNLIFSIPIRRGFSRSDATDIFQEVAAQLLSELTRIRKPEA
LAAWLIQVTSNRCTRWQTLASREGGGTDEVLASSINRETAENLVLEAEREQALRSAVQLATPQCRQLIRMLFFENPPLPY
QEVAAGLGIVTGSIGFVRRKCLDRLRSHLEEAGFR

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21773; Mature: 21642

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGETPSTSSAADVSWTDSQLVTECLSGNECAWTALIDKYKNLIFSIPIRRGFSRSDATD
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
IFQEVAAQLLSELTRIRKPEALAAWLIQVTSNRCTRWQTLASREGGGTDEVLASSINRET
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
AENLVLEAEREQALRSAVQLATPQCRQLIRMLFFENPPLPYQEVAAGLGIVTGSIGFVRR
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
KCLDRLRSHLEEAGFR
HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PGETPSTSSAADVSWTDSQLVTECLSGNECAWTALIDKYKNLIFSIPIRRGFSRSDATD
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
IFQEVAAQLLSELTRIRKPEALAAWLIQVTSNRCTRWQTLASREGGGTDEVLASSINRET
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
AENLVLEAEREQALRSAVQLATPQCRQLIRMLFFENPPLPYQEVAAGLGIVTGSIGFVRR
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
KCLDRLRSHLEEAGFR
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA