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The map label for this gene is pqqE [H]

Identifier: 116622045

GI number: 116622045

Start: 3713235

End: 3714221

Strand: Direct

Name: pqqE [H]

Synonym: Acid_2931

Alternate gene names: 116622045

Gene position: 3713235-3714221 (Clockwise)

Preceding gene: 116622040

Following gene: 116622046

Centisome position: 37.26

GC content: 58.36

Gene sequence:

>987_bases
ATGGTCTTTACCGGAGGCGATCCACTGAAACGCCCTGACTTGTTCCCGCTGCTTGAGAAGAGCGTCAGCCTCGGTCTGCG
CACCACCGTCACTCCGAGTGCGACCCCTCTGCTCACAAGTGAAGCCATCCAGAAATTCAAGGACCATGGAGTGGCTCGTA
TGGCCATCAGTATGGACGGAGCAGACTCGCAAAGCCACGACGGCTTTCGCAGGGTGGAAGGATCCTTCGACCGGACGATC
TCGGCCTTACGGCACGCGCAGGAAATCGGACTGCAAACGCAGGTCAACACCACCGTCACCAGGCACAACATGGGCCGCCC
GGATGAGATAGCCAAGGTAGTTGAGGGCTGCGGCGCTAAGCTCTGGAGCGTGTTCTTCCTCGTGGCCACCGGGCGGGCCT
CTGCTTCTCAGGACCTCACGGCCGAGGAATACGAAGAGGTCTTTGGTTTTCTGTATAATCTTTCGAAAACCATGCCTTTC
GATATCAAAACTACTGAAGCCCAACACTATCGTCGGTATGTGGCACAACAGCGAAAAGCTGAGGGATTGGGTAGCGACTC
CGCTCGACAAGCACCACCTGAAGTGATTCAGAGGCAAGCAGGCATTAATGACGGCAAGGGTATCGTCTTTGTTTCGCACA
CAGGGGAAATTTACCCGAGCGGCTTCCTTCCGCTCGCCGCTGGTAACATTCGCCGCGATTCGCTGACGCACGTGTACCGA
AATTCGCCCCTCTTCCGGACCCTTCGCGATGCCGACAATCTCCAGGGGAAGTGCGGCGAGTGGGAATTCCGAAATCTTTG
CGGGGGCTCCCGATCCCGCTCCTACGCGCTGACCGGCGACTTCCTGGCGGAGGAGCCGCGATGCGTCTATGTTCCAAGGG
CTTCCGGCAGAGTTCGACGGACCACAACAACGGCGAGGCCTCCTGTGGCGGCGATGGTCCCGCTCGTTCAGCTACAAGCG
ATCCCAGCAATGACGCCTCAACTGTAG

Upstream 100 bases:

>100_bases
ATTGTCGTGCCTGCGCGATCGATAGCCGCAATCCATTTGAATTAACCACCGAAGAAGGATTCCGCCTCCTTGAGGAAGTC
CGCACCTTCGGGGTCCGCTG

Downstream 100 bases:

>100_bases
GGCGCCGGCGAATCGTGGTCTCAGCATCAGATTGCTCGAGAATCTGCCGTATTACGAGGAATGGGTGTTAACCAAACTTG
CAGCCCTCTCAGAAATCGCG

Product: radical SAM family Fe-S protein

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MVFTGGDPLKRPDLFPLLEKSVSLGLRTTVTPSATPLLTSEAIQKFKDHGVARMAISMDGADSQSHDGFRRVEGSFDRTI
SALRHAQEIGLQTQVNTTVTRHNMGRPDEIAKVVEGCGAKLWSVFFLVATGRASASQDLTAEEYEEVFGFLYNLSKTMPF
DIKTTEAQHYRRYVAQQRKAEGLGSDSARQAPPEVIQRQAGINDGKGIVFVSHTGEIYPSGFLPLAAGNIRRDSLTHVYR
NSPLFRTLRDADNLQGKCGEWEFRNLCGGSRSRSYALTGDFLAEEPRCVYVPRASGRVRRTTTTARPPVAAMVPLVQLQA
IPAMTPQL

Sequences:

>Translated_328_residues
MVFTGGDPLKRPDLFPLLEKSVSLGLRTTVTPSATPLLTSEAIQKFKDHGVARMAISMDGADSQSHDGFRRVEGSFDRTI
SALRHAQEIGLQTQVNTTVTRHNMGRPDEIAKVVEGCGAKLWSVFFLVATGRASASQDLTAEEYEEVFGFLYNLSKTMPF
DIKTTEAQHYRRYVAQQRKAEGLGSDSARQAPPEVIQRQAGINDGKGIVFVSHTGEIYPSGFLPLAAGNIRRDSLTHVYR
NSPLFRTLRDADNLQGKCGEWEFRNLCGGSRSRSYALTGDFLAEEPRCVYVPRASGRVRRTTTTARPPVAAMVPLVQLQA
IPAMTPQL
>Mature_328_residues
MVFTGGDPLKRPDLFPLLEKSVSLGLRTTVTPSATPLLTSEAIQKFKDHGVARMAISMDGADSQSHDGFRRVEGSFDRTI
SALRHAQEIGLQTQVNTTVTRHNMGRPDEIAKVVEGCGAKLWSVFFLVATGRASASQDLTAEEYEEVFGFLYNLSKTMPF
DIKTTEAQHYRRYVAQQRKAEGLGSDSARQAPPEVIQRQAGINDGKGIVFVSHTGEIYPSGFLPLAAGNIRRDSLTHVYR
NSPLFRTLRDADNLQGKCGEWEFRNLCGGSRSRSYALTGDFLAEEPRCVYVPRASGRVRRTTTTARPPVAAMVPLVQLQA
IPAMTPQL

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 36117; Mature: 36117

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFTGGDPLKRPDLFPLLEKSVSLGLRTTVTPSATPLLTSEAIQKFKDHGVARMAISMDG
CEECCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCEEEEEEEECC
ADSQSHDGFRRVEGSFDRTISALRHAQEIGLQTQVNTTVTRHNMGRPDEIAKVVEGCGAK
CCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCEECCCEEHHCCCCCHHHHHHHHHHCCHH
LWSVFFLVATGRASASQDLTAEEYEEVFGFLYNLSKTMPFDIKTTEAQHYRRYVAQQRKA
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHH
EGLGSDSARQAPPEVIQRQAGINDGKGIVFVSHTGEIYPSGFLPLAAGNIRRDSLTHVYR
CCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCHHHHHHHHH
NSPLFRTLRDADNLQGKCGEWEFRNLCGGSRSRSYALTGDFLAEEPRCVYVPRASGRVRR
CCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEEECHHHCCCCCEEEEECCCCCEEE
TTTTARPPVAAMVPLVQLQAIPAMTPQL
CCCCCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVFTGGDPLKRPDLFPLLEKSVSLGLRTTVTPSATPLLTSEAIQKFKDHGVARMAISMDG
CEECCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCEEEEEEEECC
ADSQSHDGFRRVEGSFDRTISALRHAQEIGLQTQVNTTVTRHNMGRPDEIAKVVEGCGAK
CCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCEECCCEEHHCCCCCHHHHHHHHHHCCHH
LWSVFFLVATGRASASQDLTAEEYEEVFGFLYNLSKTMPFDIKTTEAQHYRRYVAQQRKA
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHH
EGLGSDSARQAPPEVIQRQAGINDGKGIVFVSHTGEIYPSGFLPLAAGNIRRDSLTHVYR
CCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCHHHHHHHHH
NSPLFRTLRDADNLQGKCGEWEFRNLCGGSRSRSYALTGDFLAEEPRCVYVPRASGRVRR
CCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEEECHHHCCCCCEEEEECCCCCEEE
TTTTARPPVAAMVPLVQLQAIPAMTPQL
CCCCCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA