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The map label for this gene is ypdA [H]

Identifier: 116622020

GI number: 116622020

Start: 3685252

End: 3686451

Strand: Direct

Name: ypdA [H]

Synonym: Acid_2905

Alternate gene names: 116622020

Gene position: 3685252-3686451 (Clockwise)

Preceding gene: 116622014

Following gene: 116622021

Centisome position: 36.98

GC content: 59.0

Gene sequence:

>1200_bases
TTGGGACTGCGAAACGAAATAGACGCGCAACAGATGACGGCAGGCGCCGAAGAGGTCCGCTATCCCGGCATCCTCCGGAT
GCTCCTGTTCTGGAGCGTCATCGGTGCGCTGACCGTCGCGAGATATCAGCTTCCTTCTAAGCCCGGCCCGAACCGCGAAT
CGCTCGAAGGTTTGATCGCGTGTGCTTCCTGGTATCTTCCGTGGGGAGTGCTGTCAACCCTGGTTTTCCGCCTCGAACGC
AGATACCCTCTCGGAGCGGCGGGCTGGTTACGAAATCTGGGGCTGTTGGCGGCGATCAGCGTTCCGTTTTGCCTGGTCTC
GGCCCCAATCATGATGGCGCTCTTTGACGGCTTCCGTTATGCCTTTGCTGTGTCGCATAACCCGATGGGAAGAATTGTCG
GGATCGGATACTGGTTTGCGACCTTCCCCAGCGCGCAGGGCATGTTCTGGGTGAGTGTGGGTGGCGGGTACTTCGTCCGC
ACGTTGTTTCAGCTGCACCAACACGAACAGCGGGCTACCAGACTGGCTCTTGAGAAGTCGCAGCTCGAGTCCAGCCTGAA
CCAAGCGCAGCTCGAAGCTCTGCGCGCGCGTCTCAATCCGCATTTTCTGTTCAATAGCCTGCAGAACATCTCGGTACTGA
CGAAGCAGGATCCCCAAACCGCAAGCCGCATGCTCACAGTTCTCGGAGATCTGCTTCGCGCAGTGCTCCGCAACGACTCG
CAGCCTGAGACTTCGCTGAACGAAGAGATTGATCTGACGCGCTCGTTCGTGGCACTGGAACAGATGCGCTTCGGCGACCG
TCTGCACGTCACCTTCGATATTGCGGACGAAGTACAGCAGGCTTTGGTGCCCAGCTTCCTGATGCAGCCCATTCTCGAGA
ACGCGATCATCCACGGACTGAGAGGCGTGCGCAAGACCGGAATCATCAAGGTACGCGCGGCGGAGGAGGAACACGCCCTG
GCGATCACCGTCACGGACAACGGAATCGGTCCCCCCGCCGAAGCGAGCCAAATGAAAATCGGAGTTGGGCTAGGGTCCAC
CTGTGAACGCCTCACCAGGATGTATCCGGAACGGCACGGGTTCTCCATACGCCGGTTGCAGGAGGGCGGAACCGAGGTCC
GCATTACGCTACCATTGCGGTTTACCAACTCAGTCCGTCATACCCGCGCGCATGAAACGATTCCGGCTCTTAATCGTTGA

Upstream 100 bases:

>100_bases
GTAGCGATGTCATTCACACGCTGTATGGTACGGTTCGCCAGGAACCAGGATGCGCCCTGAACCGTGCGTGGCAGAATAAA
AATGGCGGAAAGGTGAGATT

Downstream 100 bases:

>100_bases
TGACGAACCACTGATCCGCGCCGGCATCCGTGACGGCCTTTCCGGCAGGGACGACATCGAAGTCGCCGGCGAGTGCGGAA
GCGTTTCGGAAGCGGTAGAC

Product: signal transduction histidine kinase LytS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MGLRNEIDAQQMTAGAEEVRYPGILRMLLFWSVIGALTVARYQLPSKPGPNRESLEGLIACASWYLPWGVLSTLVFRLER
RYPLGAAGWLRNLGLLAAISVPFCLVSAPIMMALFDGFRYAFAVSHNPMGRIVGIGYWFATFPSAQGMFWVSVGGGYFVR
TLFQLHQHEQRATRLALEKSQLESSLNQAQLEALRARLNPHFLFNSLQNISVLTKQDPQTASRMLTVLGDLLRAVLRNDS
QPETSLNEEIDLTRSFVALEQMRFGDRLHVTFDIADEVQQALVPSFLMQPILENAIIHGLRGVRKTGIIKVRAAEEEHAL
AITVTDNGIGPPAEASQMKIGVGLGSTCERLTRMYPERHGFSIRRLQEGGTEVRITLPLRFTNSVRHTRAHETIPALNR

Sequences:

>Translated_399_residues
MGLRNEIDAQQMTAGAEEVRYPGILRMLLFWSVIGALTVARYQLPSKPGPNRESLEGLIACASWYLPWGVLSTLVFRLER
RYPLGAAGWLRNLGLLAAISVPFCLVSAPIMMALFDGFRYAFAVSHNPMGRIVGIGYWFATFPSAQGMFWVSVGGGYFVR
TLFQLHQHEQRATRLALEKSQLESSLNQAQLEALRARLNPHFLFNSLQNISVLTKQDPQTASRMLTVLGDLLRAVLRNDS
QPETSLNEEIDLTRSFVALEQMRFGDRLHVTFDIADEVQQALVPSFLMQPILENAIIHGLRGVRKTGIIKVRAAEEEHAL
AITVTDNGIGPPAEASQMKIGVGLGSTCERLTRMYPERHGFSIRRLQEGGTEVRITLPLRFTNSVRHTRAHETIPALNR
>Mature_398_residues
GLRNEIDAQQMTAGAEEVRYPGILRMLLFWSVIGALTVARYQLPSKPGPNRESLEGLIACASWYLPWGVLSTLVFRLERR
YPLGAAGWLRNLGLLAAISVPFCLVSAPIMMALFDGFRYAFAVSHNPMGRIVGIGYWFATFPSAQGMFWVSVGGGYFVRT
LFQLHQHEQRATRLALEKSQLESSLNQAQLEALRARLNPHFLFNSLQNISVLTKQDPQTASRMLTVLGDLLRAVLRNDSQ
PETSLNEEIDLTRSFVALEQMRFGDRLHVTFDIADEVQQALVPSFLMQPILENAIIHGLRGVRKTGIIKVRAAEEEHALA
ITVTDNGIGPPAEASQMKIGVGLGSTCERLTRMYPERHGFSIRRLQEGGTEVRITLPLRFTNSVRHTRAHETIPALNR

Specific function: Unknown

COG id: COG2972

COG function: function code T; Predicted signal transduction protein with a C-terminal ATPase domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788723, Length=215, Percent_Identity=35.8139534883721, Blast_Score=128, Evalue=7e-31,
Organism=Escherichia coli, GI1788446, Length=207, Percent_Identity=31.4009661835749, Blast_Score=109, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR010559
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: NA

Molecular weight: Translated: 44590; Mature: 44459

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLRNEIDAQQMTAGAEEVRYPGILRMLLFWSVIGALTVARYQLPSKPGPNRESLEGLIA
CCCCCCCCHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
CASWYLPWGVLSTLVFRLERRYPLGAAGWLRNLGLLAAISVPFCLVSAPIMMALFDGFRY
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
AFAVSHNPMGRIVGIGYWFATFPSAQGMFWVSVGGGYFVRTLFQLHQHEQRATRLALEKS
EEEECCCCCCCEEEEHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
QLESSLNQAQLEALRARLNPHFLFNSLQNISVLTKQDPQTASRMLTVLGDLLRAVLRNDS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCC
QPETSLNEEIDLTRSFVALEQMRFGDRLHVTFDIADEVQQALVPSFLMQPILENAIIHGL
CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGVRKTGIIKVRAAEEEHALAITVTDNGIGPPAEASQMKIGVGLGSTCERLTRMYPERHG
HHHHHCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEECCCCHHHHHHHHHCCHHCC
FSIRRLQEGGTEVRITLPLRFTNSVRHTRAHETIPALNR
CCHHHHHCCCCEEEEEEEEEECCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GLRNEIDAQQMTAGAEEVRYPGILRMLLFWSVIGALTVARYQLPSKPGPNRESLEGLIA
CCCCCCCHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
CASWYLPWGVLSTLVFRLERRYPLGAAGWLRNLGLLAAISVPFCLVSAPIMMALFDGFRY
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
AFAVSHNPMGRIVGIGYWFATFPSAQGMFWVSVGGGYFVRTLFQLHQHEQRATRLALEKS
EEEECCCCCCCEEEEHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
QLESSLNQAQLEALRARLNPHFLFNSLQNISVLTKQDPQTASRMLTVLGDLLRAVLRNDS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCC
QPETSLNEEIDLTRSFVALEQMRFGDRLHVTFDIADEVQQALVPSFLMQPILENAIIHGL
CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGVRKTGIIKVRAAEEEHALAITVTDNGIGPPAEASQMKIGVGLGSTCERLTRMYPERHG
HHHHHCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEECCCCHHHHHHHHHCCHHCC
FSIRRLQEGGTEVRITLPLRFTNSVRHTRAHETIPALNR
CCHHHHHCCCCEEEEEEEEEECCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]