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The map label for this gene is pal [H]

Identifier: 116621983

GI number: 116621983

Start: 3628952

End: 3629551

Strand: Reverse

Name: pal [H]

Synonym: Acid_2868

Alternate gene names: 116621983

Gene position: 3629551-3628952 (Counterclockwise)

Preceding gene: 116621986

Following gene: 116621980

Centisome position: 36.42

GC content: 62.5

Gene sequence:

>600_bases
ATGTATTACATCCGCAGACGGACCCTGATTGCCTTCGCCGCCATCACGTTATTGAGCGCAGGCTGCGCCAAGAAGAAGGT
CACTGCCGCTACACCGCCGGCGCCGGCCCCGGCCACCGCCTCTACGCCCGCACCGAGAGCGACCCCTCCACCGGCAGCAG
TCGAGAGGGCCGCTGCGCCCACGGCTTCCACCCCGACTTCGCGCTATCCCGATGCTCCCACCCGCGCCCGTATCGATCAG
CTGCTGGCCAAAATCGAAGATGCTTACTTCGACTACGATAAGGCCTCGCTCCGACCTGATGCGATGAAGGCCCTCAATGC
CGATTCGACCGAGTTGCGCGACATCCTGAAAGACTATCCCGACTACAAACTTAGGATCGAAGGCCACGCCGATGAACGCG
GCTCGGCCGAATACAACGTGGCGCTGGGCGACCGCCGGGCCGCGACCGCGAAGGAATACCTGGTGCAGGTCGGCATCCCC
TCAACGCAGCTCGACGTCACCAGCTTTGGGAAGGAACGCCCGGTCTGCCAGGATCACAATGAGAACTGCTGGCAGAAGAA
TCGCCGCATCCACATTGTGGCCGAAGCGAAAGCGCAGTAA

Upstream 100 bases:

>100_bases
TCTTGAGTGTAGACCAGGCTGAGGTACGAAGAAATACTGTGCGGACAGGATTTCACTGAGAGGTGCAATGGTGTTTCAAT
CATTTCAAGAAAGGATTCTC

Downstream 100 bases:

>100_bases
CTATTTCACGGTAAGTTCAAAATCGACCTGTAACACCAGCGCGTCGGAGGTGACCCGGATGTCAGGCACGGAGAGTTTTC
GGACTTCGCGTTTGTATCCG

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MYYIRRRTLIAFAAITLLSAGCAKKKVTAATPPAPAPATASTPAPRATPPPAAVERAAAPTASTPTSRYPDAPTRARIDQ
LLAKIEDAYFDYDKASLRPDAMKALNADSTELRDILKDYPDYKLRIEGHADERGSAEYNVALGDRRAATAKEYLVQVGIP
STQLDVTSFGKERPVCQDHNENCWQKNRRIHIVAEAKAQ

Sequences:

>Translated_199_residues
MYYIRRRTLIAFAAITLLSAGCAKKKVTAATPPAPAPATASTPAPRATPPPAAVERAAAPTASTPTSRYPDAPTRARIDQ
LLAKIEDAYFDYDKASLRPDAMKALNADSTELRDILKDYPDYKLRIEGHADERGSAEYNVALGDRRAATAKEYLVQVGIP
STQLDVTSFGKERPVCQDHNENCWQKNRRIHIVAEAKAQ
>Mature_199_residues
MYYIRRRTLIAFAAITLLSAGCAKKKVTAATPPAPAPATASTPAPRATPPPAAVERAAAPTASTPTSRYPDAPTRARIDQ
LLAKIEDAYFDYDKASLRPDAMKALNADSTELRDILKDYPDYKLRIEGHADERGSAEYNVALGDRRAATAKEYLVQVGIP
STQLDVTSFGKERPVCQDHNENCWQKNRRIHIVAEAKAQ

Specific function: Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=105, Percent_Identity=43.8095238095238, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787191, Length=108, Percent_Identity=30.5555555555556, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21781; Mature: 21781

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYIRRRTLIAFAAITLLSAGCAKKKVTAATPPAPAPATASTPAPRATPPPAAVERAAAP
CCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
TASTPTSRYPDAPTRARIDQLLAKIEDAYFDYDKASLRPDAMKALNADSTELRDILKDYP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCCHHHHHHHHHHCC
DYKLRIEGHADERGSAEYNVALGDRRAATAKEYLVQVGIPSTQLDVTSFGKERPVCQDHN
CEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEHHHHCCCCCCCCCCCC
ENCWQKNRRIHIVAEAKAQ
CHHHHCCCEEEEEECCCCC
>Mature Secondary Structure
MYYIRRRTLIAFAAITLLSAGCAKKKVTAATPPAPAPATASTPAPRATPPPAAVERAAAP
CCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
TASTPTSRYPDAPTRARIDQLLAKIEDAYFDYDKASLRPDAMKALNADSTELRDILKDYP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCCHHHHHHHHHHCC
DYKLRIEGHADERGSAEYNVALGDRRAATAKEYLVQVGIPSTQLDVTSFGKERPVCQDHN
CEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEHHHHCCCCCCCCCCCC
ENCWQKNRRIHIVAEAKAQ
CHHHHCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]