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The map label for this gene is sorC [H]

Identifier: 116517202

GI number: 116517202

Start: 219269

End: 220249

Strand: Direct

Name: sorC [H]

Synonym: SPD_0231

Alternate gene names: 116517202

Gene position: 219269-220249 (Clockwise)

Preceding gene: 116516292

Following gene: 116516692

Centisome position: 10.72

GC content: 30.48

Gene sequence:

>981_bases
ATGAATCAAGATAGGAATAAACTGCTCTCTAAAATTGCTTATCTGTATTATATTGAAAACTTAAATCAGTCACAAATAGC
AGCAAAATTAGGAATTTATAGAACCTCTATTAGTAGAATGTTAACAGAAGCAAGGAATGCAGGAATTGTTAAAATTGAAA
TAGAGAATTTTGATACCAATATGTTTAAGTTGGAAAATTATGTAAAAGAAAAATATGGTCTGGAAAGTTTAGAAATTATT
CCAAATGAATTTGATGATAATCCAACAATTTTATCTGAAAGAATTTCTCAAGTTGCAGCAGGTGTCCTTAGGAATCTAAT
TGATGATAATATGAAAATTGGCTTTTCTTGGGGGAAAAGTTTAAGTAATTTAGTAGATTTAATTCACAGTAAAAGTGTCC
GAAATGTTCACTTCTATCCTCTAGCAGGTGGTCCTAGTCACATACACGCTAAATACCATGTGAATACACTGATTTATGAA
ATGTCTAGAAAATTTCATGGAGAGTGTACATTTATGAATGCAACGATTGTGCAAGAAAATAAATTGTTAGCAGATGGTAT
TTTGCAATCAAGATATTTTGAAAATTTGAAAAATAGTTGGAAAGATTTAGATATAGCTGTAGTCGGAATTGGTGATTTTA
GCAATAAAGGAAAGCATCAATGGTTAGACATGCTTACAGAGGATGACTTTAAAGAATTGACCAAAGTTAAAACTGTAGGA
GAAATTTGTTGTCGATTTTTTGATTCAAAAGGTAAAGAAGTCTATGAAAACTTACAGGAAAGAACGATAGCAATCTCTTT
GGAAGATTTAAAAAATATTCCTCAAAGTTTAGCTGTTGCTTACGGTGATACGAAAGTATCTTCGATTCTTTCTGTCTTGC
GTGCTAATTTAGTAAATCATTTGATTACAGACAAAAATACAATTTTAAAAGTTTTGGAAGAAGATGGGGATTTGACTTTT
AGAGAGATTCTAGGTGAGTGA

Upstream 100 bases:

>100_bases
CTATGAAGTAATAACAGACGAAAAACTTTCTAAACAAAATATAGCTACATTAGAAAATGCTGGGATAATGGTTAAGGTAG
TTTCGTAAGAGGTTAAATGT

Downstream 100 bases:

>100_bases
AAATGATAGACTGATTCAGTTTATCGTTTTTCTTTTTAGTTGATTGCACATTTGTGCTTATATAAACAAAAATAGTTTAT
CTGTTGTTTTTGGATTGACA

Product: transcriptional activator

Products: NA

Alternate protein names: Sor operon activator [H]

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MNQDRNKLLSKIAYLYYIENLNQSQIAAKLGIYRTSISRMLTEARNAGIVKIEIENFDTNMFKLENYVKEKYGLESLEII
PNEFDDNPTILSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLIYE
MSRKFHGECTFMNATIVQENKLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVG
EICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNHLITDKNTILKVLEEDGDLTF
REILGE

Sequences:

>Translated_326_residues
MNQDRNKLLSKIAYLYYIENLNQSQIAAKLGIYRTSISRMLTEARNAGIVKIEIENFDTNMFKLENYVKEKYGLESLEII
PNEFDDNPTILSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLIYE
MSRKFHGECTFMNATIVQENKLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVG
EICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNHLITDKNTILKVLEEDGDLTF
REILGE
>Mature_326_residues
MNQDRNKLLSKIAYLYYIENLNQSQIAAKLGIYRTSISRMLTEARNAGIVKIEIENFDTNMFKLENYVKEKYGLESLEII
PNEFDDNPTILSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLIYE
MSRKFHGECTFMNATIVQENKLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVG
EICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNHLITDKNTILKVLEEDGDLTF
REILGE

Specific function: Positively regulates, in the presence of L-sorbose, and negatively regulates, in the absence of L-sorbose, the transcription of the sor operon [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=315, Percent_Identity=23.8095238095238, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI87082414, Length=307, Percent_Identity=25.0814332247557, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 37193; Mature: 37193

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQDRNKLLSKIAYLYYIENLNQSQIAAKLGIYRTSISRMLTEARNAGIVKIEIENFDTN
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCH
MFKLENYVKEKYGLESLEIIPNEFDDNPTILSERISQVAAGVLRNLIDDNMKIGFSWGKS
HHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHH
LSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLIYEMSRKFHGECTFMNATIVQEN
HHHHHHHHHCCCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEEEEEECC
KLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVG
HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHH
EICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNH
HHHHHHHCCCCHHHHHHHHHHEEEEEHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
LITDKNTILKVLEEDGDLTFREILGE
HHCCHHHHHHHHHCCCCCHHHHHHCC
>Mature Secondary Structure
MNQDRNKLLSKIAYLYYIENLNQSQIAAKLGIYRTSISRMLTEARNAGIVKIEIENFDTN
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCH
MFKLENYVKEKYGLESLEIIPNEFDDNPTILSERISQVAAGVLRNLIDDNMKIGFSWGKS
HHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHH
LSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLIYEMSRKFHGECTFMNATIVQEN
HHHHHHHHHCCCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEEEEEECC
KLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVG
HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHH
EICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNH
HHHHHHHCCCCHHHHHHHHHHEEEEEHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
LITDKNTILKVLEEDGDLTFREILGE
HHCCHHHHHHHHHCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]