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The map label for this gene is deoC

Identifier: 116517157

GI number: 116517157

Start: 749297

End: 749959

Strand: Direct

Name: deoC

Synonym: SPD_0737

Alternate gene names: 116517157

Gene position: 749297-749959 (Clockwise)

Preceding gene: 116516475

Following gene: 116516117

Centisome position: 36.62

GC content: 41.63

Gene sequence:

>663_bases
ATGAAATTAAATAAATATATAGATCATACGCTTTTAAAACAAGATGCAAAGAAAAAACAAATTGATAGTTTGTTGTCTGA
GGCTAGAGAGTATGGCTTTGCCAGTGTTTGCGTTAATCCGACCTGGGTTGAACATGCTAAAAAAGGACTTGAAGGCACAG
ATGTTAAGGTTTGCACAGTAGTAGGTTTCCCTTTGGGAGCAACAACTTCAGCCGTGAAAGCATTTGAGACAAAAGAAGCT
ATCCAAAATGGTGCAGATGAGATTGATATGGTGATCAATGTTGGAGCTCTCAAATCAGGTAATTTAGCCTTGGTTGAGTC
AGATATTCGCGCAGTAGTGGAAGCAAGTGGTGATAAGTTAGTGAAAGTCATTATTGAAGCTTGCCTTCTGACAGACCAAG
AAAAAATTGTTGTTTGCCAATTGGCCCAAAAAGCTGGGGCTGACTTTGTTAAAACATCTACTGGTTTTTCAACTGGTGGT
GCTACGATAGCAGATGTTACATTAATGCGTGAAACAGTTGGATCTGATATGGGAGTCAAGGCTGCTGGTGGAGCTCGTTC
TTATGCAGATGCTCTTGCCTTTGTCGAAGCAGGTGCGACCCGTATCGGAACGTCAGCTGGGGTAGCTATTTTAAAAGGAG
AATTGGCAGATGGCGACTACTGA

Upstream 100 bases:

>100_bases
AACTAGTTACAGATTTCCAAAAATGTGTTAAAATAAGTGATGAAGTAAAAAAAATCCGTGAAATTGTAGAAATCATCTCC
TAAATGGAGGGAAAACCGAA

Downstream 100 bases:

>100_bases
GTTGATTGAACTGGCAATTGAAACCAGCAAACATGCCTATGTCCCCTATTCTCACTTTCCTATCGGAGCAGTTTTAGTAG
CCAAAGACGGAAGTGTTTAC

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKLNKYIDHTLLKQDAKKKQIDSLLSEAREYGFASVCVNPTWVEHAKKGLEGTDVKVCTVVGFPLGATTSAVKAFETKEA
IQNGADEIDMVINVGALKSGNLALVESDIRAVVEASGDKLVKVIIEACLLTDQEKIVVCQLAQKAGADFVKTSTGFSTGG
ATIADVTLMRETVGSDMGVKAAGGARSYADALAFVEAGATRIGTSAGVAILKGELADGDY

Sequences:

>Translated_220_residues
MKLNKYIDHTLLKQDAKKKQIDSLLSEAREYGFASVCVNPTWVEHAKKGLEGTDVKVCTVVGFPLGATTSAVKAFETKEA
IQNGADEIDMVINVGALKSGNLALVESDIRAVVEASGDKLVKVIIEACLLTDQEKIVVCQLAQKAGADFVKTSTGFSTGG
ATIADVTLMRETVGSDMGVKAAGGARSYADALAFVEAGATRIGTSAGVAILKGELADGDY
>Mature_220_residues
MKLNKYIDHTLLKQDAKKKQIDSLLSEAREYGFASVCVNPTWVEHAKKGLEGTDVKVCTVVGFPLGATTSAVKAFETKEA
IQNGADEIDMVINVGALKSGNLALVESDIRAVVEASGDKLVKVIIEACLLTDQEKIVVCQLAQKAGADFVKTSTGFSTGG
ATIADVTLMRETVGSDMGVKAAGGARSYADALAFVEAGATRIGTSAGVAILKGELADGDY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily

Homologues:

Organism=Homo sapiens, GI116063554, Length=175, Percent_Identity=36, Blast_Score=84, Evalue=9e-17,
Organism=Escherichia coli, GI1790841, Length=207, Percent_Identity=34.7826086956522, Blast_Score=86, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17533015, Length=212, Percent_Identity=28.7735849056604, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC_STRP2 (Q04L69)

Other databases:

- EMBL:   CP000410
- RefSeq:   YP_816229.1
- ProteinModelPortal:   Q04L69
- SMR:   Q04L69
- STRING:   Q04L69
- EnsemblBacteria:   EBSTRT00000019310
- GeneID:   4441871
- GenomeReviews:   CP000410_GR
- KEGG:   spd:SPD_0737
- eggNOG:   COG0274
- GeneTree:   EBGT00050000027905
- HOGENOM:   HBG636421
- OMA:   GANTPEV
- ProtClustDB:   PRK00507
- GO:   GO:0005737
- HAMAP:   MF_00114
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 22960; Mature: 22960

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: ACT_SITE 151-151 ACT_SITE 180-180

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNKYIDHTLLKQDAKKKQIDSLLSEAREYGFASVCVNPTWVEHAKKGLEGTDVKVCTV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCCCCCCEEEEEE
VGFPLGATTSAVKAFETKEAIQNGADEIDMVINVGALKSGNLALVESDIRAVVEASGDKL
ECCCCCCHHHHHHHHHHHHHHHCCCCCEEHEEEECCCCCCCEEEEHHHHHHHHHCCCHHH
VKVIIEACLLTDQEKIVVCQLAQKAGADFVKTSTGFSTGGATIADVTLMRETVGSDMGVK
HHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCC
AAGGARSYADALAFVEAGATRIGTSAGVAILKGELADGDY
CCCCCHHHHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MKLNKYIDHTLLKQDAKKKQIDSLLSEAREYGFASVCVNPTWVEHAKKGLEGTDVKVCTV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCCCCCCEEEEEE
VGFPLGATTSAVKAFETKEAIQNGADEIDMVINVGALKSGNLALVESDIRAVVEASGDKL
ECCCCCCHHHHHHHHHHHHHHHCCCCCEEHEEEECCCCCCCEEEEHHHHHHHHHCCCHHH
VKVIIEACLLTDQEKIVVCQLAQKAGADFVKTSTGFSTGGATIADVTLMRETVGSDMGVK
HHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCC
AAGGARSYADALAFVEAGATRIGTSAGVAILKGELADGDY
CCCCCHHHHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA