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The map label for this gene is lytB

Identifier: 116517112

GI number: 116517112

Start: 866558

End: 868666

Strand: Direct

Name: lytB

Synonym: SPD_0853

Alternate gene names: 116517112

Gene position: 866558-868666 (Clockwise)

Preceding gene: 116517057

Following gene: 116516344

Centisome position: 42.35

GC content: 39.02

Gene sequence:

>2109_bases
ATGAAGAAAGTAAGATTTATTTTTTTAGCTCTGCTATTTTTCTTAGCTAGTCCAGAGGGTGCAATGGCTAGTGATGGTAC
TTGGCAAGGAAAACAGTATCTGAAAGAAGATGGCAGTCAAGCAGCGAATGAGTGGGTTTTTGATACTCATTATCAATCTT
GGTTCTATATAAAAGCAGATGCTAACTATGCTGAAAATGAATGGCTAAAGCAAGGTGACGACTATTTTTACCTCAAATCT
GGTGGCTATATGGCCAAATCAGAATGGGTAGAAGACAAGGGAGCCTTTTATTATCTTGACCAAGATGGAAAGATGAAAAG
AAATGCTTGGGTAGGAACTTCCTATGTTGGTGCAACAGGTGCCAAAGTAATAGAAGACTGGGTCTATGATTCTCAATACG
ATGCTTGGTTTTATATCAAAGCAGATGGACAGCACGCAGAGAAAGAATGGCTCCAAATTAAAGGGAAGGACTATTATTTC
AAATCCGGTGGTTATCTACTGACAAGTCAGTGGATTAATCAAGCTTATGTGAATGCTAGTGGTGCCAAAGTACAGCAAGG
TTGGCTTTTTGACAAACAATACCAATCTTGGTTTTACATCAAAGAAAATGGAAACTATGCTGATAAAGAATGGATTTTTG
AGAATGGTCACTATTATTATCTAAAATCCGGTGGCTACATGGCAGCCAATGAATGGATTTGGGATAAGGAATCTTGGTTT
TATCTCAAATTTGATGGGAAAATAGCTGAAAAAGAATGGGTCTACGATTCTCATAGTCAAGCTTGGTACTACTTCAAATC
CGGTGGCTACATGGCAGCCAATGAATGGATTTGGGATAAGGAATCTTGGTTTTACCTCAAGTTTGATGGCAAAATGGCTG
AAAAAGAATGGGTCTACGATTCTCATAGTCAAGCCTGGTACTACTTCAAATCCGGTGGTTACATGACAGCCAATGAATGG
ATTTGGGATAAGGAATCTTGGTTTTATCTCAAATCTGATGGGAAAATAGCTGAAAAAGAATGGGTCTACGATTCTCATAG
TCAAGCTTGGTACTACTTCAAATCCGGTGGTTACATGACAGCCAATGAATGGATTTGGGATAAGGAATCTTGGTTTTACC
TCAAGTCTGATGGCAAAATGGCTGAAAAAGAATGGGTCTACGATTCTCATAGTCAAGCCTGGTACTACTTCAAATCTGGT
GGCTACATGGCGAAAAATGAGACAGTAGATGGTTATCAGCTTGGAAGCGATGGTAAATGGCTTGGAGGAAAAGCTACAAA
TAAAAATGCTGCTTACTATCAAGTAGTGCCTGTCACAGCCAATGTTTATGATTCAGATGGTGAAAAGCTTTCCTATATAT
CGCAAGGTAGTGTCGTATGGCTAGATAAGGATAGAAAAAGTGATGACAAGCGCTTGGCTATTACTATTTCTGGTTTGTCA
GGCTATATGAAAACAGAAGATTTACAAGCGCTAGATGCTAGTAAGGACTTTATCCCTTATTATGAGAGTGATGGCCACCG
TTTTTATCACTATGTGGCTCAGAATGCTAGTATCCCAGTAGCTTCTCATCTTTCTGATATGGAAGTAGGCAAGAAATATT
ATTCGGCAGATGGCCTGCATTTTGATGGTTTTAAGCTTGAGAATCCCTTCCTTTTCAAAGATTTAACAGAGGCTACAAAC
TACAGTGCTGAAGAATTGGATAAGGTATTTAGTTTGCTAAACATTAATAATAGCCTTTTGGAGAACAAGGGCGCTACTTT
TAAGGAAGCCGAAGAACATTACCATATCAATGCCCTTTATCTCCTTGCCCATAGTGCCCTAGAAAGTAACTGGGGAAGAA
GTAAAATTGCCAAAGATAAGAATAATTTCTTTGGCATTACAGCCTATGATACGACCCCTTACCTTTCTGCCAAGACATTT
GATGATGTGGATAAGGGAATTTTAGGTGCAACCAAGTGGATTAAGGAAAATTATATCGATAGGGGAAGAACTTTCCTTGG
AAACAAGGCTTCTGGTATGAATGTGGAATATGCTTCAGACCCTTATTGGGGCGAAAAAATTGCTAGTGTGATGATGAAAA
TCAATGAGAAGCTAGGTGGCAAAGATTAG

Upstream 100 bases:

>100_bases
AAACTGCAATCAATCTGTTCTTGATTTTTTATTAGTTTGTAATATGAATTTAGGAGAATTTTGGTACAATAAAATAAATA
AGAACAGAGGAAGAAGGTTG

Downstream 100 bases:

>100_bases
TACTATAAGTGAATATGATTTGAGTGAATAGTAAGTTAAAAATCCTGATTTCAAGTAAAATCAGGATTTTTTCATGGATG
CAATTTTTTTGGAGTCTGGT

Product: endo-beta-N-acetylglucosaminidase precursor

Products: NA

Alternate protein names: Murein hydrolase

Number of amino acids: Translated: 702; Mature: 702

Protein sequence:

>702_residues
MKKVRFIFLALLFFLASPEGAMASDGTWQGKQYLKEDGSQAANEWVFDTHYQSWFYIKADANYAENEWLKQGDDYFYLKS
GGYMAKSEWVEDKGAFYYLDQDGKMKRNAWVGTSYVGATGAKVIEDWVYDSQYDAWFYIKADGQHAEKEWLQIKGKDYYF
KSGGYLLTSQWINQAYVNASGAKVQQGWLFDKQYQSWFYIKENGNYADKEWIFENGHYYYLKSGGYMAANEWIWDKESWF
YLKFDGKIAEKEWVYDSHSQAWYYFKSGGYMAANEWIWDKESWFYLKFDGKMAEKEWVYDSHSQAWYYFKSGGYMTANEW
IWDKESWFYLKSDGKIAEKEWVYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKMAEKEWVYDSHSQAWYYFKSG
GYMAKNETVDGYQLGSDGKWLGGKATNKNAAYYQVVPVTANVYDSDGEKLSYISQGSVVWLDKDRKSDDKRLAITISGLS
GYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVASHLSDMEVGKKYYSADGLHFDGFKLENPFLFKDLTEATN
YSAEELDKVFSLLNINNSLLENKGATFKEAEEHYHINALYLLAHSALESNWGRSKIAKDKNNFFGITAYDTTPYLSAKTF
DDVDKGILGATKWIKENYIDRGRTFLGNKASGMNVEYASDPYWGEKIASVMMKINEKLGGKD

Sequences:

>Translated_702_residues
MKKVRFIFLALLFFLASPEGAMASDGTWQGKQYLKEDGSQAANEWVFDTHYQSWFYIKADANYAENEWLKQGDDYFYLKS
GGYMAKSEWVEDKGAFYYLDQDGKMKRNAWVGTSYVGATGAKVIEDWVYDSQYDAWFYIKADGQHAEKEWLQIKGKDYYF
KSGGYLLTSQWINQAYVNASGAKVQQGWLFDKQYQSWFYIKENGNYADKEWIFENGHYYYLKSGGYMAANEWIWDKESWF
YLKFDGKIAEKEWVYDSHSQAWYYFKSGGYMAANEWIWDKESWFYLKFDGKMAEKEWVYDSHSQAWYYFKSGGYMTANEW
IWDKESWFYLKSDGKIAEKEWVYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKMAEKEWVYDSHSQAWYYFKSG
GYMAKNETVDGYQLGSDGKWLGGKATNKNAAYYQVVPVTANVYDSDGEKLSYISQGSVVWLDKDRKSDDKRLAITISGLS
GYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVASHLSDMEVGKKYYSADGLHFDGFKLENPFLFKDLTEATN
YSAEELDKVFSLLNINNSLLENKGATFKEAEEHYHINALYLLAHSALESNWGRSKIAKDKNNFFGITAYDTTPYLSAKTF
DDVDKGILGATKWIKENYIDRGRTFLGNKASGMNVEYASDPYWGEKIASVMMKINEKLGGKD
>Mature_702_residues
MKKVRFIFLALLFFLASPEGAMASDGTWQGKQYLKEDGSQAANEWVFDTHYQSWFYIKADANYAENEWLKQGDDYFYLKS
GGYMAKSEWVEDKGAFYYLDQDGKMKRNAWVGTSYVGATGAKVIEDWVYDSQYDAWFYIKADGQHAEKEWLQIKGKDYYF
KSGGYLLTSQWINQAYVNASGAKVQQGWLFDKQYQSWFYIKENGNYADKEWIFENGHYYYLKSGGYMAANEWIWDKESWF
YLKFDGKIAEKEWVYDSHSQAWYYFKSGGYMAANEWIWDKESWFYLKFDGKMAEKEWVYDSHSQAWYYFKSGGYMTANEW
IWDKESWFYLKSDGKIAEKEWVYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKMAEKEWVYDSHSQAWYYFKSG
GYMAKNETVDGYQLGSDGKWLGGKATNKNAAYYQVVPVTANVYDSDGEKLSYISQGSVVWLDKDRKSDDKRLAITISGLS
GYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVASHLSDMEVGKKYYSADGLHFDGFKLENPFLFKDLTEATN
YSAEELDKVFSLLNINNSLLENKGATFKEAEEHYHINALYLLAHSALESNWGRSKIAKDKNNFFGITAYDTTPYLSAKTF
DDVDKGILGATKWIKENYIDRGRTFLGNKASGMNVEYASDPYWGEKIASVMMKINEKLGGKD

Specific function: Plays an important role in cell wall degradation and cell separation

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 15 cell wall-binding repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LYTB_STRR6 (P59206)

Other databases:

- EMBL:   AJ010312
- EMBL:   AE007317
- PIR:   C97980
- RefSeq:   NP_358461.1
- ProteinModelPortal:   P59206
- SMR:   P59206
- STRING:   P59206
- EnsemblBacteria:   EBSTRT00000014615
- GeneID:   934406
- GenomeReviews:   AE007317_GR
- KEGG:   spr:spr0867
- eggNOG:   COG5263
- GeneTree:   EBGT00050000026602
- HOGENOM:   HBG702253
- ProtClustDB:   CLSK559969
- BioCyc:   SPNE171101:SPR0867-MONOMER
- InterPro:   IPR018337
- InterPro:   IPR013338
- InterPro:   IPR002901
- SMART:   SM00047

Pfam domain/function: PF01473 CW_binding_1; PF01832 Glucosaminidase

EC number: =3.2.1.96

Molecular weight: Translated: 81900; Mature: 81900

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS51170 CW

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVRFIFLALLFFLASPEGAMASDGTWQGKQYLKEDGSQAANEWVFDTHYQSWFYIKAD
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCHHHHCCEEEECCCEEEEEEEC
ANYAENEWLKQGDDYFYLKSGGYMAKSEWVEDKGAFYYLDQDGKMKRNAWVGTSYVGATG
CCCCCHHHHHCCCCEEEEECCCEEEHHHCCCCCCCEEEECCCCCEECCEEECCCCCCCCC
AKVIEDWVYDSQYDAWFYIKADGQHAEKEWLQIKGKDYYFKSGGYLLTSQWINQAYVNAS
HHHHHHHHCCCCCCEEEEEEECCCCCCCHHEEECCCEEEEECCCEEEEHHHHHHHEECCC
GAKVQQGWLFDKQYQSWFYIKENGNYADKEWIFENGHYYYLKSGGYMAANEWIWDKESWF
CCEEECCCEECCCCCEEEEEEECCCCCCCEEEEECCCEEEEECCCEEEECCEEECCCCEE
YLKFDGKIAEKEWVYDSHSQAWYYFKSGGYMAANEWIWDKESWFYLKFDGKMAEKEWVYD
EEEECCCCCCCEEEECCCCCEEEEECCCCEEEECCEEECCCCEEEEEECCCCCCCCCCCC
SHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKIAEKEWVYDSHSQAWYYFKSGGYMT
CCCCEEEEECCCCEEECCCEEECCCCEEEEECCCCCCCHHCEECCCCCEEEEECCCCEEE
ANEWIWDKESWFYLKSDGKMAEKEWVYDSHSQAWYYFKSGGYMAKNETVDGYQLGSDGKW
CCCEEECCCCEEEEECCCCCCCHHCCCCCCCCEEEEECCCCEEECCCCCCCEEECCCCCC
LGGKATNKNAAYYQVVPVTANVYDSDGEKLSYISQGSVVWLDKDRKSDDKRLAITISGLS
CCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCEEEEEEECCC
GYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVASHLSDMEVGKKYYSADGLH
CCCCCCCHHHHCCCCCCCCCEECCCCEEEEEEECCCCCCHHHCCCHHHHHHHHHCCCCEE
FDGFKLENPFLFKDLTEATNYSAEELDKVFSLLNINNSLLENKGATFKEAEEHYHINALY
ECCEEECCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHCEEEEEEE
LLAHSALESNWGRSKIAKDKNNFFGITAYDTTPYLSAKTFDDVDKGILGATKWIKENYID
EEHHHHHHCCCCHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RGRTFLGNKASGMNVEYASDPYWGEKIASVMMKINEKLGGKD
CCCEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKVRFIFLALLFFLASPEGAMASDGTWQGKQYLKEDGSQAANEWVFDTHYQSWFYIKAD
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCHHHHCCEEEECCCEEEEEEEC
ANYAENEWLKQGDDYFYLKSGGYMAKSEWVEDKGAFYYLDQDGKMKRNAWVGTSYVGATG
CCCCCHHHHHCCCCEEEEECCCEEEHHHCCCCCCCEEEECCCCCEECCEEECCCCCCCCC
AKVIEDWVYDSQYDAWFYIKADGQHAEKEWLQIKGKDYYFKSGGYLLTSQWINQAYVNAS
HHHHHHHHCCCCCCEEEEEEECCCCCCCHHEEECCCEEEEECCCEEEEHHHHHHHEECCC
GAKVQQGWLFDKQYQSWFYIKENGNYADKEWIFENGHYYYLKSGGYMAANEWIWDKESWF
CCEEECCCEECCCCCEEEEEEECCCCCCCEEEEECCCEEEEECCCEEEECCEEECCCCEE
YLKFDGKIAEKEWVYDSHSQAWYYFKSGGYMAANEWIWDKESWFYLKFDGKMAEKEWVYD
EEEECCCCCCCEEEECCCCCEEEEECCCCEEEECCEEECCCCEEEEEECCCCCCCCCCCC
SHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKIAEKEWVYDSHSQAWYYFKSGGYMT
CCCCEEEEECCCCEEECCCEEECCCCEEEEECCCCCCCHHCEECCCCCEEEEECCCCEEE
ANEWIWDKESWFYLKSDGKMAEKEWVYDSHSQAWYYFKSGGYMAKNETVDGYQLGSDGKW
CCCEEECCCCEEEEECCCCCCCHHCCCCCCCCEEEEECCCCEEECCCCCCCEEECCCCCC
LGGKATNKNAAYYQVVPVTANVYDSDGEKLSYISQGSVVWLDKDRKSDDKRLAITISGLS
CCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCEEEEEEECCC
GYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVASHLSDMEVGKKYYSADGLH
CCCCCCCHHHHCCCCCCCCCEECCCCEEEEEEECCCCCCHHHCCCHHHHHHHHHCCCCEE
FDGFKLENPFLFKDLTEATNYSAEELDKVFSLLNINNSLLENKGATFKEAEEHYHINALY
ECCEEECCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHCEEEEEEE
LLAHSALESNWGRSKIAKDKNNFFGITAYDTTPYLSAKTFDDVDKGILGATKWIKENYID
EEHHHHHHCCCCHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RGRTFLGNKASGMNVEYASDPYWGEKIASVMMKINEKLGGKD
CCCEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10096093; 11544234