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The map label for this gene is ybeY [C]

Identifier: 116516344

GI number: 116516344

Start: 870487

End: 870984

Strand: Direct

Name: ybeY [C]

Synonym: SPD_0855

Alternate gene names: 116516344

Gene position: 870487-870984 (Clockwise)

Preceding gene: 116517112

Following gene: 116515614

Centisome position: 42.54

GC content: 41.16

Gene sequence:

>498_bases
ATGTATATTGAAATGGTAGATGAAACTGGTCAAGTTTCAAAAGAAATGTTGCAACAAACCCAAGAAATTTTGGAATTTGC
AGCCCAAAAATTAGGAAAAGAAGACAAGGAGATGGCAGTCACTTTTGTGACCAATGAGCGTAGTCATGAACTTAATCTGG
AGTACCGTGACACCGACCGTCCGACAGATGTCATCAGCCTTGAGTATAAACCAGAATTGGAAATTGCCTTTGACGAAGAG
GATTTGCTTGAAAATCCAGAATTGGCAGAGATGATGTCTGAGTTTGATGCCTATATTGGGGAATTGTTCATCTCTATCGA
TAAGGCTCATGAGCAGGCCGAAGAATATGGTCACAGCTTTGAGCGTGAGATGGGCTTCTTGGCAGTACACGGCTTTTTAC
ATATTAACGGCTATGATCACTATACTCCGGAAGAAGAAGCGGAGATGTTCGGTTTACAAGAAGAAATTTTGACAGCCTAT
GGACTCACAAGACAATAA

Upstream 100 bases:

>100_bases
CTCTCCTTGTGATTGTATTCCATAGTATTATATCAAAAAGGTAGAATAAAATCATGGAAATGTGGTATAATAAAGCCAAG
TAAAGAGAAACGAGAAGCAC

Downstream 100 bases:

>100_bases
ACGAAAATGGAAAAATCGTGACCTGATATCCAGTTTAGAATTTGCCATCACAGGGATTTTTACTGCTATCAAGGAAGAAC
GCAATATGCGAAAACATGCA

Product: metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELEIAFDEE
DLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAY
GLTRQ

Sequences:

>Translated_165_residues
MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELEIAFDEE
DLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAY
GLTRQ
>Mature_165_residues
MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELEIAFDEE
DLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAY
GLTRQ

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=129, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_STRP2 (Q04KW1)

Other databases:

- EMBL:   CP000410
- RefSeq:   YP_816337.1
- ProteinModelPortal:   Q04KW1
- SMR:   Q04KW1
- STRING:   Q04KW1
- EnsemblBacteria:   EBSTRT00000018839
- GeneID:   4442829
- GenomeReviews:   CP000410_GR
- KEGG:   spd:SPD_0855
- eggNOG:   COG0319
- GeneTree:   EBGT00050000027888
- HOGENOM:   HBG734136
- OMA:   LNGYDHM
- ProtClustDB:   PRK00016
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 19246; Mature: 19246

Theoretical pI: Translated: 3.91; Mature: 3.91

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDR
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCEEEEEECCCCC
PTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSF
CCCEEEEEECCCEEEEECHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGLTRQ
HHHHCCEEEEEEEEECCCCCCCCHHHHHHHCHHHHHHHHHCCCCC
>Mature Secondary Structure
MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDR
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCEEEEEECCCCC
PTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSF
CCCEEEEEECCCEEEEECHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGLTRQ
HHHHCCEEEEEEEEECCCCCCCCHHHHHHHCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA