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The map label for this gene is deoB [H]

Identifier: 116516348

GI number: 116516348

Start: 738805

End: 740016

Strand: Direct

Name: deoB [H]

Synonym: SPD_0724

Alternate gene names: 116516348

Gene position: 738805-740016 (Clockwise)

Preceding gene: 116516446

Following gene: 116515467

Centisome position: 36.11

GC content: 42.33

Gene sequence:

>1212_bases
ATGTCTAAATTTAATCGTATTCATTTGGTGGTACTGGATTCTGTAGGAATCGGTGCAGCACCAGATGCTAATAACTTTGT
CAATGCAGGGGTTCCAGATGGAGCTTCTGACACACTGGGACACATTTCAAAAACAGTTGGTTTGAATGTCCCAAACATGG
CTAAAATAGGTCTTGGAAATATTCCTCGTGAAACTCCTCTTAAGACTGTAGCAGCTGAAAGCAATCCAACTGGATATGCA
ACAAAATTAGAGGAAGTATCTCTTGGTAAGGATACTATGACTGGACACTGGGAAATCATGGGACTCAACATTACTGAGCC
TTTCGATACTTTCTGGAACGGATTCCCAGAAGAAATCCTGACAAAAATCGAAGAATTCTCAGGACGCAAGGTTATTCGTG
AAACCAACAAACCTTATTCAGGAACGGCTGTTATCTATGATTTTGGACCACGTCAGATGGAAACTGGAGAGTTGATTATC
TATACTTCAGCTGACCCTGTTTTGCAGATTGCTGCCCACGAAGACATTATTCCTTTGGATGAATTGTACCGTATCTGTGA
ATACGCTCGTTCGATTACCCTTGAGCGTCCTGCCCTTCTTGGTCGCATCATTGCTCGCCCTTATGTAGGTGAACCAGGTA
ACTTCACTCGTACGGCAAACCGTCGTGACTTGGCTGTATCTCCATTTTCCCCAACTGTTTTGGATAAATTGAATGAGGCT
GGTATCGATACTTATGCTGTGGGTAAAATCAACGATATCTTTAACGGTGCTGGTATCAACCATGACATGGGTCACAACAA
GTCAAATAGTCATGGAATTGATACACTATTGAAGACTATGGGACTTGCTGAGTTTGAAAAAGGATTCTCATTCACAAACC
TAGTTGACTTTGATGCCCTTTACGGCCATCGTCGTAATGCTCACGGTTACCGTGATTGCTTGCATGAGTTTGATGAACGC
TTACCTGAAATTATCGCAGCTATGAGAGAGAATGACCTTCTCTTGATTACTGCGGATCATGGAAATGACCCAACGTATGC
AGGAACGGATCACACTCGGGAATATATTCCATTGTTGGCCTATAGCCCTGCCTTTAAAGGAAATGGTCTCATTCCAGTAG
GACATTTTGCAGATATTTCAGCGACTGTTGCCGATAACTTTGGTGTGGAAACTGCTATGATTGGGGAAAGTTTCTTAGAT
AAATTGGTATAA

Upstream 100 bases:

>100_bases
CATGGTTTATTCAACCAAATGGTGGATAAGGTAATCGTTGCTGGACGAGATGGAGTTCAGATTTCAACTTCAAAAAAAGG
AAAATAGAAGGGGGCATAAG

Downstream 100 bases:

>100_bases
GATGACGCGCTATGCTTTGCTGGTGAGAGGTATCAATGTTGGTGGTAAGAATAAGGTCGTCATGGCGGAACTTCGTCAAG
AATTGACAAACTTGGGACTG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MSKFNRIHLVVLDSVGIGAAPDANNFVNAGVPDGASDTLGHISKTVGLNVPNMAKIGLGNIPRETPLKTVAAESNPTGYA
TKLEEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEEILTKIEEFSGRKVIRETNKPYSGTAVIYDFGPRQMETGELII
YTSADPVLQIAAHEDIIPLDELYRICEYARSITLERPALLGRIIARPYVGEPGNFTRTANRRDLAVSPFSPTVLDKLNEA
GIDTYAVGKINDIFNGAGINHDMGHNKSNSHGIDTLLKTMGLAEFEKGFSFTNLVDFDALYGHRRNAHGYRDCLHEFDER
LPEIIAAMRENDLLLITADHGNDPTYAGTDHTREYIPLLAYSPAFKGNGLIPVGHFADISATVADNFGVETAMIGESFLD
KLV

Sequences:

>Translated_403_residues
MSKFNRIHLVVLDSVGIGAAPDANNFVNAGVPDGASDTLGHISKTVGLNVPNMAKIGLGNIPRETPLKTVAAESNPTGYA
TKLEEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEEILTKIEEFSGRKVIRETNKPYSGTAVIYDFGPRQMETGELII
YTSADPVLQIAAHEDIIPLDELYRICEYARSITLERPALLGRIIARPYVGEPGNFTRTANRRDLAVSPFSPTVLDKLNEA
GIDTYAVGKINDIFNGAGINHDMGHNKSNSHGIDTLLKTMGLAEFEKGFSFTNLVDFDALYGHRRNAHGYRDCLHEFDER
LPEIIAAMRENDLLLITADHGNDPTYAGTDHTREYIPLLAYSPAFKGNGLIPVGHFADISATVADNFGVETAMIGESFLD
KLV
>Mature_402_residues
SKFNRIHLVVLDSVGIGAAPDANNFVNAGVPDGASDTLGHISKTVGLNVPNMAKIGLGNIPRETPLKTVAAESNPTGYAT
KLEEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEEILTKIEEFSGRKVIRETNKPYSGTAVIYDFGPRQMETGELIIY
TSADPVLQIAAHEDIIPLDELYRICEYARSITLERPALLGRIIARPYVGEPGNFTRTANRRDLAVSPFSPTVLDKLNEAG
IDTYAVGKINDIFNGAGINHDMGHNKSNSHGIDTLLKTMGLAEFEKGFSFTNLVDFDALYGHRRNAHGYRDCLHEFDERL
PEIIAAMRENDLLLITADHGNDPTYAGTDHTREYIPLLAYSPAFKGNGLIPVGHFADISATVADNFGVETAMIGESFLDK
LV

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=418, Percent_Identity=40.4306220095694, Blast_Score=272, Evalue=3e-74,
Organism=Escherichia coli, GI1789781, Length=424, Percent_Identity=27.8301886792453, Blast_Score=99, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 44155; Mature: 44024

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFNRIHLVVLDSVGIGAAPDANNFVNAGVPDGASDTLGHISKTVGLNVPNMAKIGLGN
CCCCCEEEEEEEECCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCHHCCCCC
IPRETPLKTVAAESNPTGYATKLEEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEEIL
CCCCCCCHHEECCCCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHCCCCHHHH
TKIEEFSGRKVIRETNKPYSGTAVIYDFGPRQMETGELIIYTSADPVLQIAAHEDIIPLD
HHHHHHCCCHHHHHCCCCCCCEEEEEECCCCEECCCCEEEEECCCCEEEEECCCCCCCHH
ELYRICEYARSITLERPALLGRIIARPYVGEPGNFTRTANRRDLAVSPFSPTVLDKLNEA
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHC
GIDTYAVGKINDIFNGAGINHDMGHNKSNSHGIDTLLKTMGLAEFEKGFSFTNLVDFDAL
CCCEEEECCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHCCCHHHEEHHHHH
YGHRRNAHGYRDCLHEFDERLPEIIAAMRENDLLLITADHGNDPTYAGTDHTREYIPLLA
HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHEEEEE
YSPAFKGNGLIPVGHFADISATVADNFGVETAMIGESFLDKLV
ECCCCCCCCEEEECCCCCCCHHHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKFNRIHLVVLDSVGIGAAPDANNFVNAGVPDGASDTLGHISKTVGLNVPNMAKIGLGN
CCCCEEEEEEEECCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCHHCCCCC
IPRETPLKTVAAESNPTGYATKLEEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEEIL
CCCCCCCHHEECCCCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHCCCCHHHH
TKIEEFSGRKVIRETNKPYSGTAVIYDFGPRQMETGELIIYTSADPVLQIAAHEDIIPLD
HHHHHHCCCHHHHHCCCCCCCEEEEEECCCCEECCCCEEEEECCCCEEEEECCCCCCCHH
ELYRICEYARSITLERPALLGRIIARPYVGEPGNFTRTANRRDLAVSPFSPTVLDKLNEA
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHC
GIDTYAVGKINDIFNGAGINHDMGHNKSNSHGIDTLLKTMGLAEFEKGFSFTNLVDFDAL
CCCEEEECCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHCCCHHHEEHHHHH
YGHRRNAHGYRDCLHEFDERLPEIIAAMRENDLLLITADHGNDPTYAGTDHTREYIPLLA
HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHEEEEE
YSPAFKGNGLIPVGHFADISATVADNFGVETAMIGESFLDKLV
ECCCCCCCCEEEECCCCCCCHHHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA