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The map label for this gene is rafG [H]

Identifier: 116516219

GI number: 116516219

Start: 1690322

End: 1691155

Strand: Reverse

Name: rafG [H]

Synonym: SPD_1675

Alternate gene names: 116516219

Gene position: 1691155-1690322 (Counterclockwise)

Preceding gene: 116517088

Following gene: 116516930

Centisome position: 82.65

GC content: 42.57

Gene sequence:

>834_bases
ATGAAACAAGATGAAAGAAAAGCCCTGATTGGCAAATACATTCTATTGATTCTAGGATCGGTTCTGATTTTAGTGCCGCT
CCTTGCTACCCTCTTTAGTTCCTTCAAACCCACTAAGGATATTGTAGATAATTTCTTTGGCTTTCCAACCAACTTCACAT
GGGACAACTTTAGCCGTCTCTTAGCTGATGGGATTGGAGGCTATTATTGGAACTCTGTCGTCATCACTGTCTTGTCTTTA
CTTGCAGTAATGATCTTTATCCCTATGGCAGCCTACTCCATCGCTCGCAATATGAGTAAAAGAAAAGCCTTTACCATCAT
GTATACCCTCTTAATCCTCGGAATCTTCGTACCTTTCCAAGTCATCATGATTCCGATTACGGTTATGATGAGTAAACTCG
GTTTGGCTAATACCTTTGGTTTGATCTTGCTCTACTTGACCTATGCGATTCCACAGACCCTCTTTCTCTATGTTGGCTAT
ATCAAAATCTCGATTCCAGAAAGTCTGGATGAAGCAGCAGAGATCGATGGGGCTAATCAATTTACAACCTATTTCCGCAT
CATCTTCCCAATGATGAAACCGATGCATGCGACAACCATGATCATCAATGCCCTTTGGTTCTGGAATGACTTCATGTTGC
CACTCCTTGTCTTGAACCGGGATTCCAAAATGTGGACTCTGCCTTTGTTCCAATACAACTACGCAGGCCAATATTTCAAC
GACTACGGACCAAGCTTTGCCTCTTACGTGGTCGGCATTATCAGTATCACCATTGTCTATCTCTTCTTCCAACGCCATAT
CATTTCAGGAATGAGCAACGGGGCAGTGAAGTAA

Upstream 100 bases:

>100_bases
GCCAATGCCATTGCCGTAATCTTGTTCTTCTTAATTGTAGTGATTTCGATCATCCAATTGAGAGTATCTAAGAAATTTGA
AATTTAAGAGGAGAAGCATG

Downstream 100 bases:

>100_bases
TACTCAATGAAAATCAAAGAGCAAACTAGGAAGCTAGCCGCAGGTTGCTCAAAACACTGTTTTGAGGTTGTGGATGAAAC
TGACGAAGTCAGTAACCATA

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MKQDERKALIGKYILLILGSVLILVPLLATLFSSFKPTKDIVDNFFGFPTNFTWDNFSRLLADGIGGYYWNSVVITVLSL
LAVMIFIPMAAYSIARNMSKRKAFTIMYTLLILGIFVPFQVIMIPITVMMSKLGLANTFGLILLYLTYAIPQTLFLYVGY
IKISIPESLDEAAEIDGANQFTTYFRIIFPMMKPMHATTMIINALWFWNDFMLPLLVLNRDSKMWTLPLFQYNYAGQYFN
DYGPSFASYVVGIISITIVYLFFQRHIISGMSNGAVK

Sequences:

>Translated_277_residues
MKQDERKALIGKYILLILGSVLILVPLLATLFSSFKPTKDIVDNFFGFPTNFTWDNFSRLLADGIGGYYWNSVVITVLSL
LAVMIFIPMAAYSIARNMSKRKAFTIMYTLLILGIFVPFQVIMIPITVMMSKLGLANTFGLILLYLTYAIPQTLFLYVGY
IKISIPESLDEAAEIDGANQFTTYFRIIFPMMKPMHATTMIINALWFWNDFMLPLLVLNRDSKMWTLPLFQYNYAGQYFN
DYGPSFASYVVGIISITIVYLFFQRHIISGMSNGAVK
>Mature_277_residues
MKQDERKALIGKYILLILGSVLILVPLLATLFSSFKPTKDIVDNFFGFPTNFTWDNFSRLLADGIGGYYWNSVVITVLSL
LAVMIFIPMAAYSIARNMSKRKAFTIMYTLLILGIFVPFQVIMIPITVMMSKLGLANTFGLILLYLTYAIPQTLFLYVGY
IKISIPESLDEAAEIDGANQFTTYFRIIFPMMKPMHATTMIINALWFWNDFMLPLLVLNRDSKMWTLPLFQYNYAGQYFN
DYGPSFASYVVGIISITIVYLFFQRHIISGMSNGAVK

Specific function: Involved in a binding protein-dependent transport system responsible for the uptake of melibiose, raffinose and isomaltotriose [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1790464, Length=249, Percent_Identity=26.5060240963855, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787571, Length=288, Percent_Identity=25.3472222222222, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31575; Mature: 31575

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQDERKALIGKYILLILGSVLILVPLLATLFSSFKPTKDIVDNFFGFPTNFTWDNFSRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHH
LADGIGGYYWNSVVITVLSLLAVMIFIPMAAYSIARNMSKRKAFTIMYTLLILGIFVPFQ
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIMIPITVMMSKLGLANTFGLILLYLTYAIPQTLFLYVGYIKISIPESLDEAAEIDGANQ
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHCCCCHH
FTTYFRIIFPMMKPMHATTMIINALWFWNDFMLPLLVLNRDSKMWTLPLFQYNYAGQYFN
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCCCHHH
DYGPSFASYVVGIISITIVYLFFQRHIISGMSNGAVK
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKQDERKALIGKYILLILGSVLILVPLLATLFSSFKPTKDIVDNFFGFPTNFTWDNFSRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHH
LADGIGGYYWNSVVITVLSLLAVMIFIPMAAYSIARNMSKRKAFTIMYTLLILGIFVPFQ
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIMIPITVMMSKLGLANTFGLILLYLTYAIPQTLFLYVGYIKISIPESLDEAAEIDGANQ
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHCCCCHH
FTTYFRIIFPMMKPMHATTMIINALWFWNDFMLPLLVLNRDSKMWTLPLFQYNYAGQYFN
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCCCHHH
DYGPSFASYVVGIISITIVYLFFQRHIISGMSNGAVK
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1537846; 12397186 [H]