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The map label for this gene is ywbD [H]

Identifier: 116516182

GI number: 116516182

Start: 1240482

End: 1241654

Strand: Reverse

Name: ywbD [H]

Synonym: SPD_1212

Alternate gene names: 116516182

Gene position: 1241654-1240482 (Counterclockwise)

Preceding gene: 116516512

Following gene: 116517065

Centisome position: 60.68

GC content: 41.35

Gene sequence:

>1173_bases
ATGGTAGTTATGAATAGAATAAGAGTCAGCAAAAGGGTTGAAAAGAAGCTTGCTAAGGGGCTAGTTTTACTAGAAGCCAG
TGATCTTGAGAATGTCAATCTTAAGGATCAGGAAGTAGAGGTGCAGGGTCAGGAAGGAAACTTTCTTGGGACTGCCTACC
TTTCTCAGCAAAACAAGGGCTTGGGCTGGTTTGTCAGCAAAGACAAGGTGGCCTTCAATCAAGCTTTCTTTGAAACGTTG
TTTAGAAAAGCCAAAGAAAAGAGAAGCGCCTACTATCAAGACGATTTAACAACTGCCTATCGTCTCTTTAATCAAGAGGG
AGATGGCTTTGGGGGTCTGACAGTGGACCTTTATGGCGACTACGCCGTCTTTTCTTGGTATAACTCTTATGTTTATCAGA
TTCGTCAGACTATATCAGAAGCCTTTAGACAGGTTTTCCCTGAGGTTTTAGGGGATTATGAGAAAATCCGCTTTAAGGGT
TTGGACTATGAATCTGCCCATGTTTATGGTCAAGAAGCACCTGACTTTTTCACTGTTTTAGAAAATGGTGTCCTGTATCA
AGTCTTTATGAATGATGGCTTGATGACAGGAATTTTCCTAGACCAGCATGAGGTTCGCGGTAGTTTAGTTGACGGCTTGG
CTATGGGTAAATCCTTGCTCAATATGTTTTCCTACACAGCGGCTTTTTCAGTAGCTGCGGCCATGGGAGGAGCTAGCCAG
ACAACTTCTGTTGATCTAGCCAAACGTTCACGAGAATTGTCTCAAGCGCATTTTCAGGCAAATGGGCTCAGCACAGACGA
GCATCGTTTTATAGTCATGGATGTCTTTGAGTATTTCAAATATGCCAAACGCAAAAACTTGACCTACGATGTGATTGTCC
TAGATCCGCCTAGCTTTGCTCGGAATAAAAAACAAACTTTCTCTGTGGCCAAGGATTATCACAAGTTGATTTCCCAGAGT
CTTGAGATTTTAAATCCGGGAGGGATTATCATTGCCAGTACCAATGCTGCCAATGTTTCCCGTCAGAAATTTACAGAACA
AATTGATAAAGGCTTTGCAGGAAGAAGTTACCAGATTTTAAACAAATATGGTCTTCCAGCAGATTTTGCCTATAATAAAA
AAGATGAAAGTAGTAATTACCTCAAGGTGATTAGTATGAAGGTTAGTAAATGA

Upstream 100 bases:

>100_bases
CTTCCTAGTTTTGCAGGAAGTCTAGTATACCATTTTTTAAAAGAAGAGTAAAAAAGCAAGGGTAGTTTCTTTTTTGAGAA
TTGTCTAAAAGTTTGATATA

Downstream 100 bases:

>100_bases
AATTAATCGTTTCAGTAATGCCAAGAAGTTTAGAGGAGGCTCAGGCTCTGGATGCCACGAGGTACCTGGATGCCGACATC
ATTGAATGGCGTGCCGACTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MVVMNRIRVSKRVEKKLAKGLVLLEASDLENVNLKDQEVEVQGQEGNFLGTAYLSQQNKGLGWFVSKDKVAFNQAFFETL
FRKAKEKRSAYYQDDLTTAYRLFNQEGDGFGGLTVDLYGDYAVFSWYNSYVYQIRQTISEAFRQVFPEVLGDYEKIRFKG
LDYESAHVYGQEAPDFFTVLENGVLYQVFMNDGLMTGIFLDQHEVRGSLVDGLAMGKSLLNMFSYTAAFSVAAAMGGASQ
TTSVDLAKRSRELSQAHFQANGLSTDEHRFIVMDVFEYFKYAKRKNLTYDVIVLDPPSFARNKKQTFSVAKDYHKLISQS
LEILNPGGIIIASTNAANVSRQKFTEQIDKGFAGRSYQILNKYGLPADFAYNKKDESSNYLKVISMKVSK

Sequences:

>Translated_390_residues
MVVMNRIRVSKRVEKKLAKGLVLLEASDLENVNLKDQEVEVQGQEGNFLGTAYLSQQNKGLGWFVSKDKVAFNQAFFETL
FRKAKEKRSAYYQDDLTTAYRLFNQEGDGFGGLTVDLYGDYAVFSWYNSYVYQIRQTISEAFRQVFPEVLGDYEKIRFKG
LDYESAHVYGQEAPDFFTVLENGVLYQVFMNDGLMTGIFLDQHEVRGSLVDGLAMGKSLLNMFSYTAAFSVAAAMGGASQ
TTSVDLAKRSRELSQAHFQANGLSTDEHRFIVMDVFEYFKYAKRKNLTYDVIVLDPPSFARNKKQTFSVAKDYHKLISQS
LEILNPGGIIIASTNAANVSRQKFTEQIDKGFAGRSYQILNKYGLPADFAYNKKDESSNYLKVISMKVSK
>Mature_390_residues
MVVMNRIRVSKRVEKKLAKGLVLLEASDLENVNLKDQEVEVQGQEGNFLGTAYLSQQNKGLGWFVSKDKVAFNQAFFETL
FRKAKEKRSAYYQDDLTTAYRLFNQEGDGFGGLTVDLYGDYAVFSWYNSYVYQIRQTISEAFRQVFPEVLGDYEKIRFKG
LDYESAHVYGQEAPDFFTVLENGVLYQVFMNDGLMTGIFLDQHEVRGSLVDGLAMGKSLLNMFSYTAAFSVAAAMGGASQ
TTSVDLAKRSRELSQAHFQANGLSTDEHRFIVMDVFEYFKYAKRKNLTYDVIVLDPPSFARNKKQTFSVAKDYHKLISQS
LEILNPGGIIIASTNAANVSRQKFTEQIDKGFAGRSYQILNKYGLPADFAYNKKDESSNYLKVISMKVSK

Specific function: Unknown

COG id: COG1092

COG function: function code R; Predicted SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

Organism=Escherichia coli, GI145693111, Length=360, Percent_Identity=26.3888888888889, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1787181, Length=306, Percent_Identity=28.7581699346405, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR019614 [H]

Pfam domain/function: PF10672 Methyltrans_SAM [H]

EC number: NA

Molecular weight: Translated: 44168; Mature: 44168

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVMNRIRVSKRVEKKLAKGLVLLEASDLENVNLKDQEVEVQGQEGNFLGTAYLSQQNKG
CEEEHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCC
LGWFVSKDKVAFNQAFFETLFRKAKEKRSAYYQDDLTTAYRLFNQEGDGFGGLTVDLYGD
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
YAVFSWYNSYVYQIRQTISEAFRQVFPEVLGDYEKIRFKGLDYESAHVYGQEAPDFFTVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCEECCCCCCHHHHHH
ENGVLYQVFMNDGLMTGIFLDQHEVRGSLVDGLAMGKSLLNMFSYTAAFSVAAAMGGASQ
CCCEEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TTSVDLAKRSRELSQAHFQANGLSTDEHRFIVMDVFEYFKYAKRKNLTYDVIVLDPPSFA
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCEEEEEEECCCHHH
RNKKQTFSVAKDYHKLISQSLEILNPGGIIIASTNAANVSRQKFTEQIDKGFAGRSYQIL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHH
NKYGLPADFAYNKKDESSNYLKVISMKVSK
HHCCCCCCCCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MVVMNRIRVSKRVEKKLAKGLVLLEASDLENVNLKDQEVEVQGQEGNFLGTAYLSQQNKG
CEEEHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCC
LGWFVSKDKVAFNQAFFETLFRKAKEKRSAYYQDDLTTAYRLFNQEGDGFGGLTVDLYGD
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
YAVFSWYNSYVYQIRQTISEAFRQVFPEVLGDYEKIRFKGLDYESAHVYGQEAPDFFTVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCEECCCCCCHHHHHH
ENGVLYQVFMNDGLMTGIFLDQHEVRGSLVDGLAMGKSLLNMFSYTAAFSVAAAMGGASQ
CCCEEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TTSVDLAKRSRELSQAHFQANGLSTDEHRFIVMDVFEYFKYAKRKNLTYDVIVLDPPSFA
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCEEEEEEECCCHHH
RNKKQTFSVAKDYHKLISQSLEILNPGGIIIASTNAANVSRQKFTEQIDKGFAGRSYQIL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHH
NKYGLPADFAYNKKDESSNYLKVISMKVSK
HHCCCCCCCCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]