Click here to switch to the map view.

The map label for this gene is agaD [H]

Identifier: 116516087

GI number: 116516087

Start: 295869

End: 296687

Strand: Direct

Name: agaD [H]

Synonym: SPD_0297

Alternate gene names: 116516087

Gene position: 295869-296687 (Clockwise)

Preceding gene: 116515404

Following gene: 162139312

Centisome position: 14.46

GC content: 39.07

Gene sequence:

>819_bases
ATGACTGGATCTAACAAATTAACAAAACGTGATTATCTTAAAACGTCTTTGCGGGCATTCTTTTGTCAAAATGGATTTAA
CTATAGTAACTATCAAGGGTTGGGATATGCCAATGTGATGTATCCTGCTTTGAAAAAACACTATGGAGAGGATCAGGAAG
GTTTCTACCAAGCCTTGGAAGAAAACTGTGAATTTTATAATACCAACCCACACTTCCTGCCTTTTATTACCAGCTTGCAT
CTTGTAATGTTGGAAAATGGCCGACCAACAAAAGAAACACGTAGCATCAAGATGGCCTTGATGGGACCATTGGCAGGTAT
TGGGGATTCTCTTTCTCAATTCTGTTTAGCTCCATTGTTCTCAACCATCGCAGCTTCGTTTGCTCAAGAAGGCTTGGTTG
TCGGTCCAATCTTGTTCTTCCTTGCGATGAATACGATTTTAACAGCGATTAAATTGTCAACTGGTCTGTATGGATACAAA
CTAGGAACAACTGTGATTGATAAACTAAGCGAACAGATGGCAACGATTTCTCGTATTGCCAATATTATCGGTGTAACCGT
AATTGCTGGTTTGGCAGCGACATCTGTTAAGATTATGGTGCCGATTACCTTTGCTGCAGGGGAAGTTAAAGCAGACGCTA
AACAAAGTATCGTAAGTATTCAGGGAATGCTTGATAAGGTTGCTCCAGCTCTTCTACCAGCCCTATTTACACTTTTAGTT
TACTACTTGATCAAAGAAAAGAAATGGACAACATATAAACTCGTTATTTTAACAGTTATCATCGGAATTATCGGAAGCTG
GCTTAAGATTATAGCTTAA

Upstream 100 bases:

>100_bases
CCAACAATTGGTATTGCAATTGTAGGTACTATCTTTGCTTTGATTGAATTTTATAACAAGCCAAAAACAGCGGATCATGT
GGTAGAGGAGGAAGCACACG

Downstream 100 bases:

>100_bases
TGGATACAACATTGTTTTATGGAATAGTGATTGTCTTGGCAGTGAGTCCCCTTTTACTGTCAAGCTTTCATTCTATTCGT
CAGCAAAAGTTGCTTCGCAA

Product: PTS system, IID component

Products: NA

Alternate protein names: EIID-Aga; PTS system N-acetylgalactosamine-specific EIID component [H]

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MTGSNKLTKRDYLKTSLRAFFCQNGFNYSNYQGLGYANVMYPALKKHYGEDQEGFYQALEENCEFYNTNPHFLPFITSLH
LVMLENGRPTKETRSIKMALMGPLAGIGDSLSQFCLAPLFSTIAASFAQEGLVVGPILFFLAMNTILTAIKLSTGLYGYK
LGTTVIDKLSEQMATISRIANIIGVTVIAGLAATSVKIMVPITFAAGEVKADAKQSIVSIQGMLDKVAPALLPALFTLLV
YYLIKEKKWTTYKLVILTVIIGIIGSWLKIIA

Sequences:

>Translated_272_residues
MTGSNKLTKRDYLKTSLRAFFCQNGFNYSNYQGLGYANVMYPALKKHYGEDQEGFYQALEENCEFYNTNPHFLPFITSLH
LVMLENGRPTKETRSIKMALMGPLAGIGDSLSQFCLAPLFSTIAASFAQEGLVVGPILFFLAMNTILTAIKLSTGLYGYK
LGTTVIDKLSEQMATISRIANIIGVTVIAGLAATSVKIMVPITFAAGEVKADAKQSIVSIQGMLDKVAPALLPALFTLLV
YYLIKEKKWTTYKLVILTVIIGIIGSWLKIIA
>Mature_271_residues
TGSNKLTKRDYLKTSLRAFFCQNGFNYSNYQGLGYANVMYPALKKHYGEDQEGFYQALEENCEFYNTNPHFLPFITSLHL
VMLENGRPTKETRSIKMALMGPLAGIGDSLSQFCLAPLFSTIAASFAQEGLVVGPILFFLAMNTILTAIKLSTGLYGYKL
GTTVIDKLSEQMATISRIANIIGVTVIAGLAATSVKIMVPITFAAGEVKADAKQSIVSIQGMLDKVAPALLPALFTLLVY
YLIKEKKWTTYKLVILTVIIGIIGSWLKIIA

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3716

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIID domain [H]

Homologues:

Organism=Escherichia coli, GI1789529, Length=267, Percent_Identity=36.7041198501873, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1788122, Length=270, Percent_Identity=29.2592592592593, Blast_Score=129, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004704
- InterPro:   IPR018405 [H]

Pfam domain/function: PF03613 EIID-AGA [H]

EC number: NA

Molecular weight: Translated: 29836; Mature: 29704

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS51108 PTS_EIID

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGSNKLTKRDYLKTSLRAFFCQNGFNYSNYQGLGYANVMYPALKKHYGEDQEGFYQALE
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
ENCEFYNTNPHFLPFITSLHLVMLENGRPTKETRSIKMALMGPLAGIGDSLSQFCLAPLF
CCCCEECCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
STIAASFAQEGLVVGPILFFLAMNTILTAIKLSTGLYGYKLGTTVIDKLSEQMATISRIA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
NIIGVTVIAGLAATSVKIMVPITFAAGEVKADAKQSIVSIQGMLDKVAPALLPALFTLLV
HHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YYLIKEKKWTTYKLVILTVIIGIIGSWLKIIA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
TGSNKLTKRDYLKTSLRAFFCQNGFNYSNYQGLGYANVMYPALKKHYGEDQEGFYQALE
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
ENCEFYNTNPHFLPFITSLHLVMLENGRPTKETRSIKMALMGPLAGIGDSLSQFCLAPLF
CCCCEECCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
STIAASFAQEGLVVGPILFFLAMNTILTAIKLSTGLYGYKLGTTVIDKLSEQMATISRIA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
NIIGVTVIAGLAATSVKIMVPITFAAGEVKADAKQSIVSIQGMLDKVAPALLPALFTLLV
HHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YYLIKEKKWTTYKLVILTVIIGIIGSWLKIIA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10931310; 9278503; 8932697 [H]