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The map label for this gene is agaC [H]

Identifier: 116515404

GI number: 116515404

Start: 295103

End: 295882

Strand: Direct

Name: agaC [H]

Synonym: SPD_0296

Alternate gene names: 116515404

Gene position: 295103-295882 (Clockwise)

Preceding gene: 116515823

Following gene: 116516087

Centisome position: 14.42

GC content: 41.67

Gene sequence:

>780_bases
ATGTCGATTAATGTATTTCAAGCGATTTTAATTGGATTATGGACAGCTTTCTGTTTTAGTGGAATGCTGTTAGGAATTTA
CACCAATAGATGTATTGTTCTGTCATTTGGTGTCGGAATTATTCTAGGTGATCTGCCTACTGCTCTTGCAATGGGAGCTA
TTGGTGAATTGGCTTATATGGGATTCGGTGTTGGTGCTGGAGGTACTGTTCCACCAAACCCAATCGGACCTGGTATCTTT
GGTACCTTGATGGCTATCACTAGTGCTGGTAAAGTCAGTCCAGAAGCGGCTCTTGCCCTCTCTACTCCGATTGCTGTGGC
GATTCAATTCTTACAAACTTTCGCCTACACTGTACGTGCTGGTGCGCCTGAAACGGCGATGAAGCACTTGAAAAACCATA
ATTTGAAGAAATTTAAGTTTACTCTAAATGCAACAATTTGGTTGTTTGCCTTTATTGGATTTACCTTGGGTTGCTTGGGT
GCCCTTTCAATGGATACCTTGTTGAAACTCGTAGACTACATTCCACCGGTATTGCTTACAGGTTTGACAGTTGCTGGTAA
AATGCTCCCAGCTATCGGTTTTGCGATGATCTTGTCAGTGATGGCTAAGAAAGAGTTGATTCCCTTTGTCTTGTTGGGAT
ATGTTTGTGCAGCTTATCTAAACATCCCAACAATTGGTATTGCAATTGTAGGTACTATCTTTGCTTTGATTGAATTTTAT
AACAAGCCAAAAACAGCGGATCATGTGGTAGAGGAGGAAGCACACGATGACTGGATCTAA

Upstream 100 bases:

>100_bases
AAACTCATCAAGTAACATTTAATACGAAAACAACTCCAACAGGAAATGATGGAGCTGTTCAAGTCAACATTATGGACTAT
ATTTAAAAGAGGAGATCGTT

Downstream 100 bases:

>100_bases
CAAATTAACAAAACGTGATTATCTTAAAACGTCTTTGCGGGCATTCTTTTGTCAAAATGGATTTAACTATAGTAACTATC
AAGGGTTGGGATATGCCAAT

Product: PTS system, IIC component

Products: NA

Alternate protein names: EIIC-Aga; PTS system N-acetylgalactosamine-specific EIIC component 1 [H]

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MSINVFQAILIGLWTAFCFSGMLLGIYTNRCIVLSFGVGIILGDLPTALAMGAIGELAYMGFGVGAGGTVPPNPIGPGIF
GTLMAITSAGKVSPEAALALSTPIAVAIQFLQTFAYTVRAGAPETAMKHLKNHNLKKFKFTLNATIWLFAFIGFTLGCLG
ALSMDTLLKLVDYIPPVLLTGLTVAGKMLPAIGFAMILSVMAKKELIPFVLLGYVCAAYLNIPTIGIAIVGTIFALIEFY
NKPKTADHVVEEEAHDDWI

Sequences:

>Translated_259_residues
MSINVFQAILIGLWTAFCFSGMLLGIYTNRCIVLSFGVGIILGDLPTALAMGAIGELAYMGFGVGAGGTVPPNPIGPGIF
GTLMAITSAGKVSPEAALALSTPIAVAIQFLQTFAYTVRAGAPETAMKHLKNHNLKKFKFTLNATIWLFAFIGFTLGCLG
ALSMDTLLKLVDYIPPVLLTGLTVAGKMLPAIGFAMILSVMAKKELIPFVLLGYVCAAYLNIPTIGIAIVGTIFALIEFY
NKPKTADHVVEEEAHDDWI
>Mature_258_residues
SINVFQAILIGLWTAFCFSGMLLGIYTNRCIVLSFGVGIILGDLPTALAMGAIGELAYMGFGVGAGGTVPPNPIGPGIFG
TLMAITSAGKVSPEAALALSTPIAVAIQFLQTFAYTVRAGAPETAMKHLKNHNLKKFKFTLNATIWLFAFIGFTLGCLGA
LSMDTLLKLVDYIPPVLLTGLTVAGKMLPAIGFAMILSVMAKKELIPFVLLGYVCAAYLNIPTIGIAIVGTIFALIEFYN
KPKTADHVVEEEAHDDWI

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3715

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1789528, Length=250, Percent_Identity=31.6, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788121, Length=249, Percent_Identity=29.718875502008, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004700
- InterPro:   IPR018404 [H]

Pfam domain/function: PF03609 EII-Sor [H]

EC number: NA

Molecular weight: Translated: 27448; Mature: 27317

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: PS51106 PTS_EIIC_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SINVFQAILIGLWTAFCFSGMLLGIYTNRCIVLSFGVGIILGDLPTALAMGAIGELAYM
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
GFGVGAGGTVPPNPIGPGIFGTLMAITSAGKVSPEAALALSTPIAVAIQFLQTFAYTVRA
HCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GAPETAMKHLKNHNLKKFKFTLNATIWLFAFIGFTLGCLGALSMDTLLKLVDYIPPVLLT
CCCHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLTVAGKMLPAIGFAMILSVMAKKELIPFVLLGYVCAAYLNIPTIGIAIVGTIFALIEFY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
NKPKTADHVVEEEAHDDWI
CCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 8932697 [H]