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The map label for this gene is yckA [H]

Identifier: 116516015

GI number: 116516015

Start: 638575

End: 639252

Strand: Reverse

Name: yckA [H]

Synonym: SPD_0617

Alternate gene names: 116516015

Gene position: 639252-638575 (Counterclockwise)

Preceding gene: 116516616

Following gene: 116515352

Centisome position: 31.24

GC content: 41.74

Gene sequence:

>678_bases
ATGCAGGATTCGGGAATCCAAGTACTCTTTCAAGGAAATAATCTCCTGAGAATCTTACAGGGGTTGGGCGTTACGATTGG
GATATCCATCCTGTCTGTCCTCTTATCCATGATGTTCGGAACAGTCATGGGAATCATCATGACCTCCCATTCTAGAATCA
TACGATTTTTAACACGATTGTATCTGGAATTTATCCGTATCATGCCCCAGCTGGTGCTACTCTTCATCGTTTACTTTGGC
TTGGCTCGAAACTTTAATATCAATATCTCAGGTGAGACTTCAGCTATTATCGTTTTTACCCTCTGGGGAACAGCTGAAAT
GGGAGACTTGGTACGTGGAGCTATCACTTCTCTCCCTAAACATCAGTTTGAAAGTGGACAGGCACTCGGCTTGACTAATG
TTCAACTTTACTACCACATCATCATCCCACAAGTCTTAAGAAGACTGCTACCGCAGGCTATCAATCTTGTCACTCGGATG
ATTAAAACCACTTCATTAGTTGTTTTGATTGGGGTTGTGGAAGTGACCAAAGTTGGACAACAAATCATCGATAGCAATCG
CCTGACCATCCCAACTGCTTCATTTTGGATTTATGGAACCATTCTAGTCTTATATTTCGCAGTTTGCTACCCTATTTCCA
AACTATCCACTCACTTAGAAAAACATTGGAGAAACTAA

Upstream 100 bases:

>100_bases
TATGAGACAGACATTGCGCTAGCTATGTTGGTAGTTGCTTATCTGATCATGCTGCTACCCATCTCACTGGTCTTTAGCTG
GATAGAAAGGAGGATCCGCC

Downstream 100 bases:

>100_bases
ATGTCTGAAACTATCTTAGAAATCAAGGAACTAAAAAAATCCTTCGGAGACAATCCCATCCTCCAAGGACTTTCTCTAGA
AATCAAAAAAGGGGAAGTTG

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MQDSGIQVLFQGNNLLRILQGLGVTIGISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRLYLEFIRIMPQLVLLFIVYFG
LARNFNINISGETSAIIVFTLWGTAEMGDLVRGAITSLPKHQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRM
IKTTSLVVLIGVVEVTKVGQQIIDSNRLTIPTASFWIYGTILVLYFAVCYPISKLSTHLEKHWRN

Sequences:

>Translated_225_residues
MQDSGIQVLFQGNNLLRILQGLGVTIGISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRLYLEFIRIMPQLVLLFIVYFG
LARNFNINISGETSAIIVFTLWGTAEMGDLVRGAITSLPKHQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRM
IKTTSLVVLIGVVEVTKVGQQIIDSNRLTIPTASFWIYGTILVLYFAVCYPISKLSTHLEKHWRN
>Mature_225_residues
MQDSGIQVLFQGNNLLRILQGLGVTIGISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRLYLEFIRIMPQLVLLFIVYFG
LARNFNINISGETSAIIVFTLWGTAEMGDLVRGAITSLPKHQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRM
IKTTSLVVLIGVVEVTKVGQQIIDSNRLTIPTASFWIYGTILVLYFAVCYPISKLSTHLEKHWRN

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=222, Percent_Identity=30.1801801801802, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787030, Length=206, Percent_Identity=30.5825242718447, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI87082239, Length=209, Percent_Identity=27.7511961722488, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786874, Length=179, Percent_Identity=26.8156424581006, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1788646, Length=173, Percent_Identity=30.635838150289, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787087, Length=183, Percent_Identity=24.0437158469945, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788645, Length=215, Percent_Identity=27.4418604651163, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786873, Length=181, Percent_Identity=23.2044198895028, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25309; Mature: 25309

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDSGIQVLFQGNNLLRILQGLGVTIGISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRL
CCCCCEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLEFIRIMPQLVLLFIVYFGLARNFNINISGETSAIIVFTLWGTAEMGDLVRGAITSLPK
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHCCH
HQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRMIKTTSLVVLIGVVEVTKVGQ
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIIDSNRLTIPTASFWIYGTILVLYFAVCYPISKLSTHLEKHWRN
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQDSGIQVLFQGNNLLRILQGLGVTIGISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRL
CCCCCEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLEFIRIMPQLVLLFIVYFGLARNFNINISGETSAIIVFTLWGTAEMGDLVRGAITSLPK
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHCCH
HQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRMIKTTSLVVLIGVVEVTKVGQ
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIIDSNRLTIPTASFWIYGTILVLYFAVCYPISKLSTHLEKHWRN
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]