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The map label for this gene is patM [H]

Identifier: 116516616

GI number: 116516616

Start: 639212

End: 639892

Strand: Reverse

Name: patM [H]

Synonym: SPD_0618

Alternate gene names: 116516616

Gene position: 639892-639212 (Counterclockwise)

Preceding gene: 116516553

Following gene: 116516015

Centisome position: 31.27

GC content: 46.11

Gene sequence:

>681_bases
TTGGATTGGTCCATTGTTGAACAATATCTACCACTATATCAAAAGGCATTCTTTCTGACCTTGCATATTGCAGTTTGGGG
AATTTTGGGATCCTTTCTGCTCGGTTTAATCGTTAGTATCATCCGACATTATCGAATCCCTGTTTTGGCGCAAGTAGCGA
CAGCCTACATTGAATTGTCACGTAATACGCCCCTTTTGATTCAACTCTTCTTTCTCTACTTCGGTCTTCCCCGAATCGGG
ATTGTCCTATCTTCAGAAGTCTGTGCAACGCTTGGGCTTGTCTTTTTAGGAGGCTCCTATATGGCAGAATCTTTCCGAAG
TGGGCTGGAAGCCATCAGTCAAACCCAGCAGGAGATTGGCCTCGCTATTGGTCTGACACCTCTACAGGTCTTTCGCTATG
TGGTTCTTCCGCAAGCAACAGCGGTGGCACTCCCCTCCTTTAGTGCCAATGTCATTTTCCTTATCAAGGAAACCTCTGTT
TTCTCAGCAGTGGCTTTGGCCGACCTCATGTACGTCGCCAAGGATTTGATTGGTCTCTACTATGAGACAGACATTGCGCT
AGCTATGTTGGTAGTTGCTTATCTGATCATGCTGCTACCCATCTCACTGGTCTTTAGCTGGATAGAAAGGAGGATCCGCC
ATGCAGGATTCGGGAATCCAAGTACTCTTTCAAGGAAATAA

Upstream 100 bases:

>100_bases
GGTAAAAAATCCTTATAACGGCAATAAAAAATAGATATTATCCAAAGAAGATTTTAAGTGCTACAATAACTGTATTATTT
CTAGATGGGAGGTTCTATTT

Downstream 100 bases:

>100_bases
TCTCCTGAGAATCTTACAGGGGTTGGGCGTTACGATTGGGATATCCATCCTGTCTGTCCTCTTATCCATGATGTTCGGAA
CAGTCATGGGAATCATCATG

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MDWSIVEQYLPLYQKAFFLTLHIAVWGILGSFLLGLIVSIIRHYRIPVLAQVATAYIELSRNTPLLIQLFFLYFGLPRIG
IVLSSEVCATLGLVFLGGSYMAESFRSGLEAISQTQQEIGLAIGLTPLQVFRYVVLPQATAVALPSFSANVIFLIKETSV
FSAVALADLMYVAKDLIGLYYETDIALAMLVVAYLIMLLPISLVFSWIERRIRHAGFGNPSTLSRK

Sequences:

>Translated_226_residues
MDWSIVEQYLPLYQKAFFLTLHIAVWGILGSFLLGLIVSIIRHYRIPVLAQVATAYIELSRNTPLLIQLFFLYFGLPRIG
IVLSSEVCATLGLVFLGGSYMAESFRSGLEAISQTQQEIGLAIGLTPLQVFRYVVLPQATAVALPSFSANVIFLIKETSV
FSAVALADLMYVAKDLIGLYYETDIALAMLVVAYLIMLLPISLVFSWIERRIRHAGFGNPSTLSRK
>Mature_226_residues
MDWSIVEQYLPLYQKAFFLTLHIAVWGILGSFLLGLIVSIIRHYRIPVLAQVATAYIELSRNTPLLIQLFFLYFGLPRIG
IVLSSEVCATLGLVFLGGSYMAESFRSGLEAISQTQQEIGLAIGLTPLQVFRYVVLPQATAVALPSFSANVIFLIKETSV
FSAVALADLMYVAKDLIGLYYETDIALAMLVVAYLIMLLPISLVFSWIERRIRHAGFGNPSTLSRK

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=165, Percent_Identity=36.969696969697, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1787030, Length=214, Percent_Identity=30.8411214953271, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1786874, Length=221, Percent_Identity=27.1493212669683, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786873, Length=219, Percent_Identity=26.9406392694064, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1787086, Length=214, Percent_Identity=28.0373831775701, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788645, Length=205, Percent_Identity=25.8536585365854, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082239, Length=154, Percent_Identity=30.5194805194805, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI48994930, Length=161, Percent_Identity=30.4347826086957, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787087, Length=231, Percent_Identity=25.1082251082251, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25099; Mature: 25099

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWSIVEQYLPLYQKAFFLTLHIAVWGILGSFLLGLIVSIIRHYRIPVLAQVATAYIELS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
RNTPLLIQLFFLYFGLPRIGIVLSSEVCATLGLVFLGGSYMAESFRSGLEAISQTQQEIG
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
LAIGLTPLQVFRYVVLPQATAVALPSFSANVIFLIKETSVFSAVALADLMYVAKDLIGLY
HHHCCCHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
YETDIALAMLVVAYLIMLLPISLVFSWIERRIRHAGFGNPSTLSRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDWSIVEQYLPLYQKAFFLTLHIAVWGILGSFLLGLIVSIIRHYRIPVLAQVATAYIELS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
RNTPLLIQLFFLYFGLPRIGIVLSSEVCATLGLVFLGGSYMAESFRSGLEAISQTQQEIG
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
LAIGLTPLQVFRYVVLPQATAVALPSFSANVIFLIKETSVFSAVALADLMYVAKDLIGLY
HHHCCCHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
YETDIALAMLVVAYLIMLLPISLVFSWIERRIRHAGFGNPSTLSRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA