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The map label for this gene is yabF [H]

Identifier: 116515737

GI number: 116515737

Start: 1783033

End: 1783593

Strand: Reverse

Name: yabF [H]

Synonym: SPD_1787

Alternate gene names: 116515737

Gene position: 1783593-1783033 (Counterclockwise)

Preceding gene: 116516605

Following gene: 116516188

Centisome position: 87.17

GC content: 47.06

Gene sequence:

>561_bases
ATGAAAGAGAGAATTTCCCAAGTTATCGTGGTTGAAGGTCGTGATGATACGGTCAATCTCAAGCGTTATTTCGATGTGGA
GACCTATGAGACTCGAGGTTCTGCCATCAATGACCAGGACATAGAGCGGATTCAGCGTCTACACCAACGTCATGGAGTCA
TTGTCTTTACAGACCCAGATTTTAATGGGGAGCGGATTCGGCGCATGATTATGACGGCCATTCCAACAGTTCAGCATGCC
TTTCTCAAGCGAGATGAAGCTGTTCCCAAGTCCAAGACCAAGGGGCGTTCTCTGGGAATTGAGCATGCCAGCTATGAAGA
CCTGAAAACGGCTCTAGCTCAGGTGACAGAACAATTTGAACATGAGAGTCAGTTTGACATTAGTCGTAGCGATTTGATTC
GCCTTGGTTTTCTAGCAGGGGCAGACAGCCGTAAGCGTAGAGAATATCTCGGAGAGACTCTCCGAATCGGCTATTCTAAC
GGCAAGCAACTCCTCAAACGCCTAGAGTTGTTTGGGGTTACTTTGGCAGAAGTGGAAGAAGCTATGAAATCTTATGAGTA
G

Upstream 100 bases:

>100_bases
TGGTCGACTTTATCGCTGACTTGCGTGGTATGACGACAGAAGAGCTGGCGGTAGCAACGACTGCAAATGCAGAACGCATT
TTTGGATTGGACAGCAAGTA

Downstream 100 bases:

>100_bases
GAAAGATGTGACCGTTACAATTTTTTAAGTTTCACAGTATTTTTCGAAGCAGGTAGAAGAGGAGGCGTCTGATGTTAATT
GGTCAAAAAATTAAAGAGAT

Product: primase-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MKERISQVIVVEGRDDTVNLKRYFDVETYETRGSAINDQDIERIQRLHQRHGVIVFTDPDFNGERIRRMIMTAIPTVQHA
FLKRDEAVPKSKTKGRSLGIEHASYEDLKTALAQVTEQFEHESQFDISRSDLIRLGFLAGADSRKRREYLGETLRIGYSN
GKQLLKRLELFGVTLAEVEEAMKSYE

Sequences:

>Translated_186_residues
MKERISQVIVVEGRDDTVNLKRYFDVETYETRGSAINDQDIERIQRLHQRHGVIVFTDPDFNGERIRRMIMTAIPTVQHA
FLKRDEAVPKSKTKGRSLGIEHASYEDLKTALAQVTEQFEHESQFDISRSDLIRLGFLAGADSRKRREYLGETLRIGYSN
GKQLLKRLELFGVTLAEVEEAMKSYE
>Mature_186_residues
MKERISQVIVVEGRDDTVNLKRYFDVETYETRGSAINDQDIERIQRLHQRHGVIVFTDPDFNGERIRRMIMTAIPTVQHA
FLKRDEAVPKSKTKGRSLGIEHASYEDLKTALAQVTEQFEHESQFDISRSDLIRLGFLAGADSRKRREYLGETLRIGYSN
GKQLLKRLELFGVTLAEVEEAMKSYE

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 21506; Mature: 21506

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKERISQVIVVEGRDDTVNLKRYFDVETYETRGSAINDQDIERIQRLHQRHGVIVFTDPD
CCCHHCEEEEEECCCCEEEHHHEECCHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEECCC
FNGERIRRMIMTAIPTVQHAFLKRDEAVPKSKTKGRSLGIEHASYEDLKTALAQVTEQFE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
HESQFDISRSDLIRLGFLAGADSRKRREYLGETLRIGYSNGKQLLKRLELFGVTLAEVEE
CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHH
AMKSYE
HHHHCC
>Mature Secondary Structure
MKERISQVIVVEGRDDTVNLKRYFDVETYETRGSAINDQDIERIQRLHQRHGVIVFTDPD
CCCHHCEEEEEECCCCEEEHHHEECCHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEECCC
FNGERIRRMIMTAIPTVQHAFLKRDEAVPKSKTKGRSLGIEHASYEDLKTALAQVTEQFE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
HESQFDISRSDLIRLGFLAGADSRKRREYLGETLRIGYSNGKQLLKRLELFGVTLAEVEE
CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHH
AMKSYE
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]