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The map label for this gene is ymfF [H]

Identifier: 116515448

GI number: 116515448

Start: 2028120

End: 2029370

Strand: Reverse

Name: ymfF [H]

Synonym: SPD_2052

Alternate gene names: 116515448

Gene position: 2029370-2028120 (Counterclockwise)

Preceding gene: 116515965

Following gene: 116516624

Centisome position: 99.18

GC content: 34.37

Gene sequence:

>1251_bases
ATGGAGTTAGTGCATGGAATTTCAACACATTTTATCCAATCAAAAAAGTTTAAAACAAACAAAATTACCGTGCGTTTTAC
CGCTCCATTATCCCTTGATACGATTGCAGGTCACATGTTGAGTGCAAGTATGCTAGAGACTGCTAATCAGATGTACCCCA
CTTCTCAAGATTTGAGGAGACACTTGGCCAGTCTATACGGTACAGATATGTCAACCAATTGTTTCAGAAGAGGGCAAAGC
CACATTATAGAATTGACATTTACCTATGTTCGTGATGAGTTTTTAAGTAGGAAAAACGTGCTAACCTCTCAGATTTTGGA
ACTTGTAAAAGAAACTCTTTTTTCACCCGCAGTAGTTGATAATGGGTTTGATCCGGCCTTATTTGAAATTGAGAAAAAAC
AATTGCTAGCAAGTTTAGCAGCTGATATGGATGATTCTTTTTATTTTGCACATAAAGAATTGGATAAATTGTTTTTTCAT
GATGAACGTCTTCAATTGGAATATAGTGATTTACGAAATCGTATTTTAGCTGAAACTCCACAAAGTTCTTATTCTTGTTT
CCAAGAATTTTTAGCCAATGATCGAATAGATTTCTTTTTCCTAGGTGATTTTAATGAGGTTGAAATTCAAAATGTATTAG
AATCATTTGGCTTTAAAGGTCGAAAAGGAGATGTGAAGGTTCAGTATTGTCAACCTTATTCTAATATCCTTCAGGAAGGT
ATGGTTCGGAAAAATGTGGGACAATCCATTTTGGAATTAGGTTATCATTACCGTTCTAAATATGGTGATGAGCAACATTT
ACCCATGATTGTAATGAATGGTTTACTTGGTGGATTTGCTCACTCTAAGCTCTTTACAAATGTCCGTGAAAATGCTGGAT
TAGCTTATACCATTTCAAGTGAGCTTGATTTATTTAGTGGATTCTTGAGGATGTATGCTGGTATCAATCGAGAAAATCGT
AACCAGGCTCGTAAAATGATGAATAATCAACTGCTTGATTTAAAAAAAGGTTATTTTACAGAGTTTGAGTTAAATCAGAC
CAAGGAAATGATTCGTTGGTCGTTGTTACTTTCTCAAGATAATCAATCTTCATTGATTGAACGTGCTTATCAAAATGCCT
TATTTGGAAAATCTTCAGCAGACTTTAAAAGTTGGATTGCAAAGCTTGAACAAATTGACAAAGATGCTATTTGTAGAGTA
GCTAATAATGTGAAACTACAAGCGATTTACTTTATGGAAGGAATAGAATGA

Upstream 100 bases:

>100_bases
CGAGAAATGTAAGCGATTTTTATTTCAAAAGTGTTACAGGGAACAAGAAAATTTCAGGTTTTCGTGATATAATAGAAGTC
TGTATATAAGGAGGTAAATC

Downstream 100 bases:

>100_bases
CAAAGGTTGTTTTTGAAGAAAAATACTATCCAGCTGTAAAAGAAAAGGTTTATCGAACTCGTTTGGCCAACGGATTGACA
GTTGCTCTTTTGCCTAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MELVHGISTHFIQSKKFKTNKITVRFTAPLSLDTIAGHMLSASMLETANQMYPTSQDLRRHLASLYGTDMSTNCFRRGQS
HIIELTFTYVRDEFLSRKNVLTSQILELVKETLFSPAVVDNGFDPALFEIEKKQLLASLAADMDDSFYFAHKELDKLFFH
DERLQLEYSDLRNRILAETPQSSYSCFQEFLANDRIDFFFLGDFNEVEIQNVLESFGFKGRKGDVKVQYCQPYSNILQEG
MVRKNVGQSILELGYHYRSKYGDEQHLPMIVMNGLLGGFAHSKLFTNVRENAGLAYTISSELDLFSGFLRMYAGINRENR
NQARKMMNNQLLDLKKGYFTEFELNQTKEMIRWSLLLSQDNQSSLIERAYQNALFGKSSADFKSWIAKLEQIDKDAICRV
ANNVKLQAIYFMEGIE

Sequences:

>Translated_416_residues
MELVHGISTHFIQSKKFKTNKITVRFTAPLSLDTIAGHMLSASMLETANQMYPTSQDLRRHLASLYGTDMSTNCFRRGQS
HIIELTFTYVRDEFLSRKNVLTSQILELVKETLFSPAVVDNGFDPALFEIEKKQLLASLAADMDDSFYFAHKELDKLFFH
DERLQLEYSDLRNRILAETPQSSYSCFQEFLANDRIDFFFLGDFNEVEIQNVLESFGFKGRKGDVKVQYCQPYSNILQEG
MVRKNVGQSILELGYHYRSKYGDEQHLPMIVMNGLLGGFAHSKLFTNVRENAGLAYTISSELDLFSGFLRMYAGINRENR
NQARKMMNNQLLDLKKGYFTEFELNQTKEMIRWSLLLSQDNQSSLIERAYQNALFGKSSADFKSWIAKLEQIDKDAICRV
ANNVKLQAIYFMEGIE
>Mature_416_residues
MELVHGISTHFIQSKKFKTNKITVRFTAPLSLDTIAGHMLSASMLETANQMYPTSQDLRRHLASLYGTDMSTNCFRRGQS
HIIELTFTYVRDEFLSRKNVLTSQILELVKETLFSPAVVDNGFDPALFEIEKKQLLASLAADMDDSFYFAHKELDKLFFH
DERLQLEYSDLRNRILAETPQSSYSCFQEFLANDRIDFFFLGDFNEVEIQNVLESFGFKGRKGDVKVQYCQPYSNILQEG
MVRKNVGQSILELGYHYRSKYGDEQHLPMIVMNGLLGGFAHSKLFTNVRENAGLAYTISSELDLFSGFLRMYAGINRENR
NQARKMMNNQLLDLKKGYFTEFELNQTKEMIRWSLLLSQDNQSSLIERAYQNALFGKSSADFKSWIAKLEQIDKDAICRV
ANNVKLQAIYFMEGIE

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR007863 [H]

Pfam domain/function: PF05193 Peptidase_M16_C [H]

EC number: NA

Molecular weight: Translated: 47993; Mature: 47993

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELVHGISTHFIQSKKFKTNKITVRFTAPLSLDTIAGHMLSASMLETANQMYPTSQDLRR
CCCHHHHHHHHHHCCCEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
HLASLYGTDMSTNCFRRGQSHIIELTFTYVRDEFLSRKNVLTSQILELVKETLFSPAVVD
HHHHHHCCCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHC
NGFDPALFEIEKKQLLASLAADMDDSFYFAHKELDKLFFHDERLQLEYSDLRNRILAETP
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHEEEHHHHHHHHHHCCC
QSSYSCFQEFLANDRIDFFFLGDFNEVEIQNVLESFGFKGRKGDVKVQYCQPYSNILQEG
CHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHH
MVRKNVGQSILELGYHYRSKYGDEQHLPMIVMNGLLGGFAHSKLFTNVRENAGLAYTISS
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
ELDLFSGFLRMYAGINRENRNQARKMMNNQLLDLKKGYFTEFELNQTKEMIRWSLLLSQD
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCC
NQSSLIERAYQNALFGKSSADFKSWIAKLEQIDKDAICRVANNVKLQAIYFMEGIE
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCEEEEEEEECCCC
>Mature Secondary Structure
MELVHGISTHFIQSKKFKTNKITVRFTAPLSLDTIAGHMLSASMLETANQMYPTSQDLRR
CCCHHHHHHHHHHCCCEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
HLASLYGTDMSTNCFRRGQSHIIELTFTYVRDEFLSRKNVLTSQILELVKETLFSPAVVD
HHHHHHCCCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHC
NGFDPALFEIEKKQLLASLAADMDDSFYFAHKELDKLFFHDERLQLEYSDLRNRILAETP
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHEEEHHHHHHHHHHCCC
QSSYSCFQEFLANDRIDFFFLGDFNEVEIQNVLESFGFKGRKGDVKVQYCQPYSNILQEG
CHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHH
MVRKNVGQSILELGYHYRSKYGDEQHLPMIVMNGLLGGFAHSKLFTNVRENAGLAYTISS
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
ELDLFSGFLRMYAGINRENRNQARKMMNNQLLDLKKGYFTEFELNQTKEMIRWSLLLSQD
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCC
NQSSLIERAYQNALFGKSSADFKSWIAKLEQIDKDAICRVANNVKLQAIYFMEGIE
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]