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The map label for this gene is ymfH [H]

Identifier: 116516624

GI number: 116516624

Start: 2026840

End: 2028123

Strand: Reverse

Name: ymfH [H]

Synonym: SPD_2051

Alternate gene names: 116516624

Gene position: 2028123-2026840 (Counterclockwise)

Preceding gene: 116515448

Following gene: 116515748

Centisome position: 99.12

GC content: 34.5

Gene sequence:

>1284_bases
ATGACAAAGGTTGTTTTTGAAGAAAAATACTATCCAGCTGTAAAAGAAAAGGTTTATCGAACTCGTTTGGCCAACGGATT
GACAGTTGCTCTTTTGCCTAAAAAGGAATTTAAAGAGGTTTACGGGAGTGTCACTGTACAGTTTGGTTCGGTAGATACGT
TTGTCACAGAAGTTGACGGATATGTAAAACAATATCCTGGAGGAATTGCTCATTTTCTTGAACATAAATTATTTGAGAGA
GAAGATTCTAGTGATTTGATGTCGGCTTTTACGAGTCTAGGTGCAGATAGTAATGCCTTTACAAGCTTTACAAAAACAAA
CTATCTTTTTTCAGCAACGGATTATTTTTTAGAAAATTTAGATTTACTTGATGAATTGGTAACATCAGCACACTTTACTG
AAGCTTCCATTCTGACAGAGCAGGATATTATTCAGCAAGAACGAGAAATGTACCAAGATGATCCAGATTCGTGTTTATTC
TTTTCAACTTTAGCGAATTTGTATCCTGGTACACCTTTAGCAACTGATATAGTTGGAAGTGAGGAGTCCATTTCCCAAAT
CAATCTAACTAATTTGCAAGAAAATTTTACAAAGTTTTACAAACCTGTAAACATGTCTCTGTTTTTAGTTGGTAATTTTG
ATGTGGAGCGAGTACAGGACTATTTTGAAAGCAAAGAACTGAAAGATTCAGATTTTCAGGAAGTAGCAAGAGAAAAGTTG
TTTTTACAGCCTGTAAAGCCAACAGATAGTATGAGAATGGAAGTATCTTCTCCCAAACTAGCGATTGGAGTTAGAGGTAA
GCGAGAAGTTTCTGAAGCGGATTGCTATCGACATCATATTTTATTAAAATTATTGTTTGCAATGATGTTTGGTTGGACTT
CGGATCGTTTTCAAAAATGTTATGAATCAGGTAAAATTGATGCGTCCTTATCTCTGGAAGTTGAAATAACAAGTCGCTTT
CATTTTGTCATGTTGACAATAGATACGAAAGAGCCAGTTGCTTTGTCTCATCAATTTAGGAAGGCTATTCGTAATTTTAC
AAAGGATTTAGATATTACAGAGGAACATTTAGATATTATCAAAAGAGAGATGTTTGGCGAATTTTTCAGTAGCATGAACT
CTCTTGAATTTATTGCAACGCAATATGATGCTTTTGAAAATGGTGAGACAATTTTTGATTTGCCGAAAATTTTACAGGAA
ATTACTTTAGAGGATGTCCTTGATGCTGGACATCATTTAATAGATGATGGTGACATAGTTGATTTTACAATATTCCCATC
GTAG

Upstream 100 bases:

>100_bases
AAAGTTGGATTGCAAAGCTTGAACAAATTGACAAAGATGCTATTTGTAGAGTAGCTAATAATGTGAAACTACAAGCGATT
TACTTTATGGAAGGAATAGA

Downstream 100 bases:

>100_bases
TAACCTATCATAATAGACACTAGAAAGAAGGGATGACAAGTATGAGAAAAAAAACAATTGGAGAGGTTTTACGATTAGCT
AGAATCAATCAGGGATTGAG

Product: peptidase, M16 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MTKVVFEEKYYPAVKEKVYRTRLANGLTVALLPKKEFKEVYGSVTVQFGSVDTFVTEVDGYVKQYPGGIAHFLEHKLFER
EDSSDLMSAFTSLGADSNAFTSFTKTNYLFSATDYFLENLDLLDELVTSAHFTEASILTEQDIIQQEREMYQDDPDSCLF
FSTLANLYPGTPLATDIVGSEESISQINLTNLQENFTKFYKPVNMSLFLVGNFDVERVQDYFESKELKDSDFQEVAREKL
FLQPVKPTDSMRMEVSSPKLAIGVRGKREVSEADCYRHHILLKLLFAMMFGWTSDRFQKCYESGKIDASLSLEVEITSRF
HFVMLTIDTKEPVALSHQFRKAIRNFTKDLDITEEHLDIIKREMFGEFFSSMNSLEFIATQYDAFENGETIFDLPKILQE
ITLEDVLDAGHHLIDDGDIVDFTIFPS

Sequences:

>Translated_427_residues
MTKVVFEEKYYPAVKEKVYRTRLANGLTVALLPKKEFKEVYGSVTVQFGSVDTFVTEVDGYVKQYPGGIAHFLEHKLFER
EDSSDLMSAFTSLGADSNAFTSFTKTNYLFSATDYFLENLDLLDELVTSAHFTEASILTEQDIIQQEREMYQDDPDSCLF
FSTLANLYPGTPLATDIVGSEESISQINLTNLQENFTKFYKPVNMSLFLVGNFDVERVQDYFESKELKDSDFQEVAREKL
FLQPVKPTDSMRMEVSSPKLAIGVRGKREVSEADCYRHHILLKLLFAMMFGWTSDRFQKCYESGKIDASLSLEVEITSRF
HFVMLTIDTKEPVALSHQFRKAIRNFTKDLDITEEHLDIIKREMFGEFFSSMNSLEFIATQYDAFENGETIFDLPKILQE
ITLEDVLDAGHHLIDDGDIVDFTIFPS
>Mature_426_residues
TKVVFEEKYYPAVKEKVYRTRLANGLTVALLPKKEFKEVYGSVTVQFGSVDTFVTEVDGYVKQYPGGIAHFLEHKLFERE
DSSDLMSAFTSLGADSNAFTSFTKTNYLFSATDYFLENLDLLDELVTSAHFTEASILTEQDIIQQEREMYQDDPDSCLFF
STLANLYPGTPLATDIVGSEESISQINLTNLQENFTKFYKPVNMSLFLVGNFDVERVQDYFESKELKDSDFQEVAREKLF
LQPVKPTDSMRMEVSSPKLAIGVRGKREVSEADCYRHHILLKLLFAMMFGWTSDRFQKCYESGKIDASLSLEVEITSRFH
FVMLTIDTKEPVALSHQFRKAIRNFTKDLDITEEHLDIIKREMFGEFFSSMNSLEFIATQYDAFENGETIFDLPKILQEI
TLEDVLDAGHHLIDDGDIVDFTIFPS

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17553678, Length=195, Percent_Identity=30.2564102564103, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71999683, Length=219, Percent_Identity=28.310502283105, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR011765
- InterPro:   IPR007863 [H]

Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]

EC number: 3.4.99.- [C]

Molecular weight: Translated: 48993; Mature: 48862

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVVFEEKYYPAVKEKVYRTRLANGLTVALLPKKEFKEVYGSVTVQFGSVDTFVTEVDG
CCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCEEEEECCHHHHHHHHHH
YVKQYPGGIAHFLEHKLFEREDSSDLMSAFTSLGADSNAFTSFTKTNYLFSATDYFLENL
HHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHCCEEEHHHHHHHHHH
DLLDELVTSAHFTEASILTEQDIIQQEREMYQDDPDSCLFFSTLANLYPGTPLATDIVGS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHCCCC
EESISQINLTNLQENFTKFYKPVNMSLFLVGNFDVERVQDYFESKELKDSDFQEVAREKL
CHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHH
FLQPVKPTDSMRMEVSSPKLAIGVRGKREVSEADCYRHHILLKLLFAMMFGWTSDRFQKC
EECCCCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
YESGKIDASLSLEVEITSRFHFVMLTIDTKEPVALSHQFRKAIRNFTKDLDITEEHLDII
HHCCCCCEEEEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
KREMFGEFFSSMNSLEFIATQYDAFENGETIFDLPKILQEITLEDVLDAGHHLIDDGDIV
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCEE
DFTIFPS
EEEECCC
>Mature Secondary Structure 
TKVVFEEKYYPAVKEKVYRTRLANGLTVALLPKKEFKEVYGSVTVQFGSVDTFVTEVDG
CCEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCEEEEECCHHHHHHHHHH
YVKQYPGGIAHFLEHKLFEREDSSDLMSAFTSLGADSNAFTSFTKTNYLFSATDYFLENL
HHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHCCEEEHHHHHHHHHH
DLLDELVTSAHFTEASILTEQDIIQQEREMYQDDPDSCLFFSTLANLYPGTPLATDIVGS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHCCCC
EESISQINLTNLQENFTKFYKPVNMSLFLVGNFDVERVQDYFESKELKDSDFQEVAREKL
CHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHH
FLQPVKPTDSMRMEVSSPKLAIGVRGKREVSEADCYRHHILLKLLFAMMFGWTSDRFQKC
EECCCCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
YESGKIDASLSLEVEITSRFHFVMLTIDTKEPVALSHQFRKAIRNFTKDLDITEEHLDII
HHCCCCCEEEEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
KREMFGEFFSSMNSLEFIATQYDAFENGETIFDLPKILQEITLEDVLDAGHHLIDDGDIV
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCEE
DFTIFPS
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]