Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 116494331

GI number: 116494331

Start: 784391

End: 784825

Strand: Direct

Name: yqgF [C]

Synonym: LSEI_0787

Alternate gene names: 116494331

Gene position: 784391-784825 (Clockwise)

Preceding gene: 116494330

Following gene: 116494332

Centisome position: 27.09

GC content: 48.97

Gene sequence:

>435_bases
ATGCGCTTGATGGGGTTGGACGTCGGTTCCCGAACCGTTGGGGTCGCGGTCAGTGATCCTTTGGGCTGGACAGCTCAAGG
TTTGGAAATTATTCGGATCAACGAAGACAAGGAGCAGTTCGGCATCGCCCGCCTCAAGGAGCTTGTGAAGCAATATGAGG
TAACGGCGTTTGTATTGGGGTTGCCTAAAAACATGAACAACTCGATTGGACCGCGTGCGGAAAAGTCACAAGCTTACGGT
GAACTGTTGAAAACAACGTTTGGGTTGCCAGTTGATTTCATTGACGAGCGACTCACAACAGTTGAGGCTTCCCGCATGTT
GATTGAAGAAGCTGATGCCAGTCGCAAACGGCAAAAGCAGGTGATCGATAAATTAGCTGCTCAGATGATTCTCCAGAATT
ATCTGGATGCAAAAGGTCCCTTGACCAAGCAATAA

Upstream 100 bases:

>100_bases
TTCCACGGTACAATGATGCGCGTAATCTAATCCGGAAACATGAGCGCGATGAGATCATTGAAGAGCTTGTTCGAAACTAT
CTTGGCAAGGAGCAAGCTTA

Downstream 100 bases:

>100_bases
TCAGGGCAAGTGATGGCATGACCTCCGCCCGTGTTGAAGGAGAAACAAGATGGCAAATAATGAACATGTAACGCCCGGCG
AAGACGATCAGCAGATTACG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MRLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKEQFGIARLKELVKQYEVTAFVLGLPKNMNNSIGPRAEKSQAYG
ELLKTTFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQVIDKLAAQMILQNYLDAKGPLTKQ

Sequences:

>Translated_144_residues
MRLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKEQFGIARLKELVKQYEVTAFVLGLPKNMNNSIGPRAEKSQAYG
ELLKTTFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQVIDKLAAQMILQNYLDAKGPLTKQ
>Mature_144_residues
MRLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKEQFGIARLKELVKQYEVTAFVLGLPKNMNNSIGPRAEKSQAYG
ELLKTTFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQVIDKLAAQMILQNYLDAKGPLTKQ

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=134, Percent_Identity=29.8507462686567, Blast_Score=70, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_LACC3 (Q03AZ9)

Other databases:

- EMBL:   CP000423
- RefSeq:   YP_806065.1
- ProteinModelPortal:   Q03AZ9
- SMR:   Q03AZ9
- STRING:   Q03AZ9
- GeneID:   4419375
- GenomeReviews:   CP000423_GR
- KEGG:   lca:LSEI_0787
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- PhylomeDB:   Q03AZ9
- ProtClustDB:   PRK00109
- BioCyc:   LCAS321967:LSEI_0787-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16050; Mature: 16050

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKEQFGIARLKELVKQYEVTAFVLG
CEEECCCCCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEE
LPKNMNNSIGPRAEKSQAYGELLKTTFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIDKLAAQMILQNYLDAKGPLTKQ
HHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKEQFGIARLKELVKQYEVTAFVLG
CEEECCCCCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEE
LPKNMNNSIGPRAEKSQAYGELLKTTFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIDKLAAQMILQNYLDAKGPLTKQ
HHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA