| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116494111
Identifier: 116494111
GI number: 116494111
Start: 546775
End: 547134
Strand: Direct
Name: 116494111
Synonym: LSEI_0554
Alternate gene names: NA
Gene position: 546775-547134 (Clockwise)
Preceding gene: 116494110
Following gene: 116494112
Centisome position: 18.89
GC content: 40.56
Gene sequence:
>360_bases TTGGATCGTGATTCCGTTCGTAAAATAGTCCAGAACTATATCGACAAGAACAAACTGAGTAACCCAGAATTTTCCAGAAA GGCTAAAATAAATGATCGTACTGTGCGACGTTTGCTAAACTCTGAGGAAAGTATTTCGGATTCTAACCTTAAAAAATTGG CATCTGCTTGTGTACAGCCTAAATTTGCGGTCGTTGGCTTTAATTCTGGTAAAGTCTACTTTCGAGGTGAACATCATTCG GACTGTACTCGCTGGATCAATGAACAGGTACGCACCGGCAACACCTTACACACAAGTCGAAGAACATATTTAGACATGAA CGAACCCATGTTGATTCAGCGATTACCAGAAGATTCATAG
Upstream 100 bases:
>100_bases CCAAACAAATTTCACTTAAATGTCTGGGTCTTTAATACGCAAGCAGGAAGAACAATTAACTACAATAATGGTTCATTTCA ATAGAGAGGAGCCTGATTTA
Downstream 100 bases:
>100_bases TAATAGAACGCCCGGGCTAATAAAATGCTGTCTATTGAACCAATTTCTGAACTAAAACTTAGAAGGGATATTCTATTATG CAATATCGGGAAAATAAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 119; Mature: 119
Protein sequence:
>119_residues MDRDSVRKIVQNYIDKNKLSNPEFSRKAKINDRTVRRLLNSEESISDSNLKKLASACVQPKFAVVGFNSGKVYFRGEHHS DCTRWINEQVRTGNTLHTSRRTYLDMNEPMLIQRLPEDS
Sequences:
>Translated_119_residues MDRDSVRKIVQNYIDKNKLSNPEFSRKAKINDRTVRRLLNSEESISDSNLKKLASACVQPKFAVVGFNSGKVYFRGEHHS DCTRWINEQVRTGNTLHTSRRTYLDMNEPMLIQRLPEDS >Mature_119_residues MDRDSVRKIVQNYIDKNKLSNPEFSRKAKINDRTVRRLLNSEESISDSNLKKLASACVQPKFAVVGFNSGKVYFRGEHHS DCTRWINEQVRTGNTLHTSRRTYLDMNEPMLIQRLPEDS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13843; Mature: 13843
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRDSVRKIVQNYIDKNKLSNPEFSRKAKINDRTVRRLLNSEESISDSNLKKLASACVQP CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCC KFAVVGFNSGKVYFRGEHHSDCTRWINEQVRTGNTLHTSRRTYLDMNEPMLIQRLPEDS CEEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCEECCCCCHHHHCCCCCC >Mature Secondary Structure MDRDSVRKIVQNYIDKNKLSNPEFSRKAKINDRTVRRLLNSEESISDSNLKKLASACVQP CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCC KFAVVGFNSGKVYFRGEHHSDCTRWINEQVRTGNTLHTSRRTYLDMNEPMLIQRLPEDS CEEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCEECCCCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA