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The map label for this gene is yvoA [H]

Identifier: 116493484

GI number: 116493484

Start: 1731249

End: 1731983

Strand: Reverse

Name: yvoA [H]

Synonym: PEPE_1756

Alternate gene names: 116493484

Gene position: 1731983-1731249 (Counterclockwise)

Preceding gene: 116493485

Following gene: 116493483

Centisome position: 94.52

GC content: 35.51

Gene sequence:

>735_bases
ATGGGATTTAACTATAATGAAAAGCAACCTGTATATGGACAGCTTGTTGATGAATTAAGAAAACAAATTAAAAATAACTA
TAAACCAAATGACAAATTATTATCCGAACGTGAAATTATGAGAAAGTATGAAGTGAGCCGTAATACGGTTCGCGAAGCCT
TAAGTGAACTAGAAAACATTGGGTATATTTACCGCCAGCATGGTAAGGGGACTTTTGTAGCAAGTTGGATGGATGATACG
ACTAAAATTGGTGATGAATATAGTTTTACGGAACAAATGAAATCGCTTGGTCGCAAACCGGAAACAAAGATCATAGAAAT
GTCAGAGCGTAAAGCCGATGAATATTTTAGTGGCAAGCTAAGAATTAATGTTGGAGATCCCATTGTTAAACTCAAACGGC
TCCGTTTGGCGGATGGAATGCCAATGATGATTGATCGAACTTACCTTCCTGCTGAAAAATTTGAAAATCTGTCAATTTAT
GAGTTAGAAACGAAACAACGTTCGCTCTATAATGTTTTTCTAGAAGACTATGGTGAAAAAGTTCGTCTAGCAGATGAGAT
GCTTTCAGTAGGGATTATTAGTGATAAAGATGCCGATTTATTAAAGATTGCACCTAATTCACCAGGATTCATGCTCCGTC
GAACAACATACAATCATAAAAATGAAATCATTGAATATACCATTAGTAGCGCTCGTGGTGACCAATTTGTTTATAACATT
AAGTATAAGCATTGA

Upstream 100 bases:

>100_bases
GGCATAATCGGTAAAGCTTAACATTAATTGCCACTCAAAACCTAAATTTGGTATATCATATAAATTATGAATCAGATTTA
GAAAGTGTGGTAATCAAACC

Downstream 100 bases:

>100_bases
TGGATGAGAGGAGAATTCCCACTATGTACAAAATGACTGATAATGAATTAACCCAAATGGGTGCTGTTATAACAACTCGT
GAAATACAACAAGAACCAGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MGFNYNEKQPVYGQLVDELRKQIKNNYKPNDKLLSEREIMRKYEVSRNTVREALSELENIGYIYRQHGKGTFVASWMDDT
TKIGDEYSFTEQMKSLGRKPETKIIEMSERKADEYFSGKLRINVGDPIVKLKRLRLADGMPMMIDRTYLPAEKFENLSIY
ELETKQRSLYNVFLEDYGEKVRLADEMLSVGIISDKDADLLKIAPNSPGFMLRRTTYNHKNEIIEYTISSARGDQFVYNI
KYKH

Sequences:

>Translated_244_residues
MGFNYNEKQPVYGQLVDELRKQIKNNYKPNDKLLSEREIMRKYEVSRNTVREALSELENIGYIYRQHGKGTFVASWMDDT
TKIGDEYSFTEQMKSLGRKPETKIIEMSERKADEYFSGKLRINVGDPIVKLKRLRLADGMPMMIDRTYLPAEKFENLSIY
ELETKQRSLYNVFLEDYGEKVRLADEMLSVGIISDKDADLLKIAPNSPGFMLRRTTYNHKNEIIEYTISSARGDQFVYNI
KYKH
>Mature_243_residues
GFNYNEKQPVYGQLVDELRKQIKNNYKPNDKLLSEREIMRKYEVSRNTVREALSELENIGYIYRQHGKGTFVASWMDDTT
KIGDEYSFTEQMKSLGRKPETKIIEMSERKADEYFSGKLRINVGDPIVKLKRLRLADGMPMMIDRTYLPAEKFENLSIYE
LETKQRSLYNVFLEDYGEKVRLADEMLSVGIISDKDADLLKIAPNSPGFMLRRTTYNHKNEIIEYTISSARGDQFVYNIK
YKH

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=237, Percent_Identity=23.2067510548523, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790540, Length=238, Percent_Identity=23.9495798319328, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI87082252, Length=233, Percent_Identity=24.8927038626609, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788418, Length=232, Percent_Identity=23.7068965517241, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786950, Length=235, Percent_Identity=25.1063829787234, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28647; Mature: 28516

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFNYNEKQPVYGQLVDELRKQIKNNYKPNDKLLSEREIMRKYEVSRNTVREALSELENI
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GYIYRQHGKGTFVASWMDDTTKIGDEYSFTEQMKSLGRKPETKIIEMSERKADEYFSGKL
CCCEEECCCCEEEEECCCCHHHCCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCEE
RINVGDPIVKLKRLRLADGMPMMIDRTYLPAEKFENLSIYELETKQRSLYNVFLEDYGEK
EEECCCHHHHHHHHHHCCCCCEEEECCCCCHHHHCCCEEEEECHHHHHHHHHHHHHCCCH
VRLADEMLSVGIISDKDADLLKIAPNSPGFMLRRTTYNHKNEIIEYTISSARGDQFVYNI
HHHHHHHHHHCEECCCCCCEEEECCCCCCEEEEECCCCCCHHHEEEEECCCCCCEEEEEE
KYKH
EECC
>Mature Secondary Structure 
GFNYNEKQPVYGQLVDELRKQIKNNYKPNDKLLSEREIMRKYEVSRNTVREALSELENI
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GYIYRQHGKGTFVASWMDDTTKIGDEYSFTEQMKSLGRKPETKIIEMSERKADEYFSGKL
CCCEEECCCCEEEEECCCCHHHCCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCEE
RINVGDPIVKLKRLRLADGMPMMIDRTYLPAEKFENLSIYELETKQRSLYNVFLEDYGEK
EEECCCHHHHHHHHHHCCCCCEEEECCCCCHHHHCCCEEEEECHHHHHHHHHHHHHCCCH
VRLADEMLSVGIISDKDADLLKIAPNSPGFMLRRTTYNHKNEIIEYTISSARGDQFVYNI
HHHHHHHHHHCEECCCCCCEEEECCCCCCEEEEECCCCCCHHHEEEEECCCCCCEEEEEE
KYKH
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]