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The map label for this gene is rbsU [H]

Identifier: 116493425

GI number: 116493425

Start: 1672414

End: 1673298

Strand: Reverse

Name: rbsU [H]

Synonym: PEPE_1697

Alternate gene names: 116493425

Gene position: 1673298-1672414 (Counterclockwise)

Preceding gene: 116493426

Following gene: 116493422

Centisome position: 91.32

GC content: 40.45

Gene sequence:

>885_bases
ATGAACACGACAGCGTTATTAATCGGACTTGGACCACTATTAGGTTGGGGATTATTTCCAACAATTGCATCTAAATTCGG
TGGACGTCCGGTAAATCAGATTGTAGGTACAGCTTTTGGAACATTTATCTTTGCTTTTGTTTTTGCTCTAATCAAAGGAT
TAGCTTTACCAACTGGAATGGACTTGGTTTTTACCGTTATTTCAGGGATTGGTTGGGCCAGCGCTCAAATTATTACATTT
AAGTGCTTTGCAATGATTGGATCTTCACGGGCCATGCCTATTACTACCGCTTTCCAACTGTTAGGTGCTTCATTATGGGG
TGTGATTGCTCTAGGAAATTGGCCTGGAGTTACGGCTAAAATTATTGGTGCAGTTGCGCTAGTCTTGATTATTATTGGTG
CTTCACTCACGGTCTGGTCAGAACATAAGTCTAAAGAAAATACCCAATTGATTACTAAAGCAGTCGCTTGGTTGGCTGTA
GGTGAAATTGGTTATTGGGCATATTCTGCCGCTCCTCAAGCTACATCAGTCGATGGAATGCATGCATTCTTACCTCAAGC
AATTGGTATGGTAATCGTTGGTGTAGTATATGCAATCTTCCTCTCAATGCGAGGTGAAAAATCAGCATTAACTGAAGCAG
TATCTTACCGCCAAATCTGGTCTGGTTTCTTCTTTGCTTTTGCTGCACTCACATATTTAATTTCAGCTCAACCAAACATG
AACGGCTTGGCCACTGGATTTATTCTTTCACAAACTTCAGTGGTTCTAGCTACCTTAACTGGAATTTGGTTCCTAGGTCA
AAAGAAGACGCCAAAAGAAATGGCAGTAACCATTGGTGGATTAGTATTAATCTTAGTTGCTGCAACAATTACAGTCATGA
TTTAA

Upstream 100 bases:

>100_bases
GTTCGTACTGGTGAAATGACTCCTTATTCTAATATTATTTTAGAAAGTGGCGTTGTATTTTAAATTTAGCAATTTCGTCA
ATTAATTAAGGAGGAATTAC

Downstream 100 bases:

>100_bases
TAAAAAATAATTTGTTTTAAAAAGTTTGTAACACGTTCTGATATTAGGAACGTGTTTTTTGTATTCACTCGAATTAGTCC
AAAAAGAAACAGCATTTCAC

Product: ribose transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MNTTALLIGLGPLLGWGLFPTIASKFGGRPVNQIVGTAFGTFIFAFVFALIKGLALPTGMDLVFTVISGIGWASAQIITF
KCFAMIGSSRAMPITTAFQLLGASLWGVIALGNWPGVTAKIIGAVALVLIIIGASLTVWSEHKSKENTQLITKAVAWLAV
GEIGYWAYSAAPQATSVDGMHAFLPQAIGMVIVGVVYAIFLSMRGEKSALTEAVSYRQIWSGFFFAFAALTYLISAQPNM
NGLATGFILSQTSVVLATLTGIWFLGQKKTPKEMAVTIGGLVLILVAATITVMI

Sequences:

>Translated_294_residues
MNTTALLIGLGPLLGWGLFPTIASKFGGRPVNQIVGTAFGTFIFAFVFALIKGLALPTGMDLVFTVISGIGWASAQIITF
KCFAMIGSSRAMPITTAFQLLGASLWGVIALGNWPGVTAKIIGAVALVLIIIGASLTVWSEHKSKENTQLITKAVAWLAV
GEIGYWAYSAAPQATSVDGMHAFLPQAIGMVIVGVVYAIFLSMRGEKSALTEAVSYRQIWSGFFFAFAALTYLISAQPNM
NGLATGFILSQTSVVLATLTGIWFLGQKKTPKEMAVTIGGLVLILVAATITVMI
>Mature_294_residues
MNTTALLIGLGPLLGWGLFPTIASKFGGRPVNQIVGTAFGTFIFAFVFALIKGLALPTGMDLVFTVISGIGWASAQIITF
KCFAMIGSSRAMPITTAFQLLGASLWGVIALGNWPGVTAKIIGAVALVLIIIGASLTVWSEHKSKENTQLITKAVAWLAV
GEIGYWAYSAAPQATSVDGMHAFLPQAIGMVIVGVVYAIFLSMRGEKSALTEAVSYRQIWSGFFFAFAALTYLISAQPNM
NGLATGFILSQTSVVLATLTGIWFLGQKKTPKEMAVTIGGLVLILVAATITVMI

Specific function: Could be involved in the uptake of ribose [H]

COG id: COG4975

COG function: function code G; Putative glucose uptake permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GRP transporter (TC 2.A.7.5) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010651 [H]

Pfam domain/function: PF06800 Sugar_transport [H]

EC number: NA

Molecular weight: Translated: 30989; Mature: 30989

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTALLIGLGPLLGWGLFPTIASKFGGRPVNQIVGTAFGTFIFAFVFALIKGLALPTGM
CCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DLVFTVISGIGWASAQIITFKCFAMIGSSRAMPITTAFQLLGASLWGVIALGNWPGVTAK
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCCCHHHH
IIGAVALVLIIIGASLTVWSEHKSKENTQLITKAVAWLAVGEIGYWAYSAAPQATSVDGM
HHHHHHHHHHHHHCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
HAFLPQAIGMVIVGVVYAIFLSMRGEKSALTEAVSYRQIWSGFFFAFAALTYLISAQPNM
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NGLATGFILSQTSVVLATLTGIWFLGQKKTPKEMAVTIGGLVLILVAATITVMI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNTTALLIGLGPLLGWGLFPTIASKFGGRPVNQIVGTAFGTFIFAFVFALIKGLALPTGM
CCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DLVFTVISGIGWASAQIITFKCFAMIGSSRAMPITTAFQLLGASLWGVIALGNWPGVTAK
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCCCHHHH
IIGAVALVLIIIGASLTVWSEHKSKENTQLITKAVAWLAVGEIGYWAYSAAPQATSVDGM
HHHHHHHHHHHHHCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
HAFLPQAIGMVIVGVVYAIFLSMRGEKSALTEAVSYRQIWSGFFFAFAALTYLISAQPNM
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NGLATGFILSQTSVVLATLTGIWFLGQKKTPKEMAVTIGGLVLILVAATITVMI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12566566 [H]