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The map label for this gene is rbsD

Identifier: 116493426

GI number: 116493426

Start: 1673336

End: 1673731

Strand: Reverse

Name: rbsD

Synonym: PEPE_1698

Alternate gene names: 116493426

Gene position: 1673731-1673336 (Counterclockwise)

Preceding gene: 116493427

Following gene: 116493425

Centisome position: 91.34

GC content: 32.07

Gene sequence:

>396_bases
ATGAAGAAAACTAAAATGATTAATTCAGATATGTCACGGGTAATTGCTCAAATGGGTCACTTTGATAAATTAAGTATCGG
TGATGCTGGAATGCCTGTTCCAATGGGCATAGAAAAGATTGATTTGGCAGTAGATAATGGAATTCCTAGTTTCATGCAAG
TTTTAACTAACGTTTTAGAAGAACTTGAAGTTCAAAGAATTTATCTAGCAGAAGAAATTAAGACCGAAAATCCTAAGATG
CTAGAAAATATTAAAGCTTTAATGCCTGAAACACCAATTACTTTTATGCCACATTCAGATATGAAACAAGATTTGAATAA
TTGCCACGCATTTGTTCGTACTGGTGAAATGACTCCTTATTCTAATATTATTTTAGAAAGTGGCGTTGTATTTTAA

Upstream 100 bases:

>100_bases
CTTATATGGTAATAAAGCTTCATCCCTAACTGTACAACGCTTTGGTGCACAACCATCAATCCCTTACAAAAAAGAATTGG
AAAAATAGGAGGAAATAACA

Downstream 100 bases:

>100_bases
ATTTAGCAATTTCGTCAATTAATTAAGGAGGAATTACATGAACACGACAGCGTTATTAATCGGACTTGGACCACTATTAG
GTTGGGGATTATTTCCAACA

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKKTKMINSDMSRVIAQMGHFDKLSIGDAGMPVPMGIEKIDLAVDNGIPSFMQVLTNVLEELEVQRIYLAEEIKTENPKM
LENIKALMPETPITFMPHSDMKQDLNNCHAFVRTGEMTPYSNIILESGVVF

Sequences:

>Translated_131_residues
MKKTKMINSDMSRVIAQMGHFDKLSIGDAGMPVPMGIEKIDLAVDNGIPSFMQVLTNVLEELEVQRIYLAEEIKTENPKM
LENIKALMPETPITFMPHSDMKQDLNNCHAFVRTGEMTPYSNIILESGVVF
>Mature_131_residues
MKKTKMINSDMSRVIAQMGHFDKLSIGDAGMPVPMGIEKIDLAVDNGIPSFMQVLTNVLEELEVQRIYLAEEIKTENPKM
LENIKALMPETPITFMPHSDMKQDLNNCHAFVRTGEMTPYSNIILESGVVF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=41.0071942446043, Blast_Score=117, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_PEDPA (Q03DK3)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_805161.1
- ProteinModelPortal:   Q03DK3
- SMR:   Q03DK3
- STRING:   Q03DK3
- GeneID:   4417500
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_1698
- NMPDR:   fig|278197.10.peg.1500
- eggNOG:   COG1869
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- PhylomeDB:   Q03DK3
- ProtClustDB:   PRK11797
- BioCyc:   PPEN278197:PEPE_1698-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14745; Mature: 14745

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 98-98

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
9.2 %Met     (Translated Protein)
9.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
9.2 %Met     (Mature Protein)
9.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTKMINSDMSRVIAQMGHFDKLSIGDAGMPVPMGIEKIDLAVDNGIPSFMQVLTNVLE
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
ELEVQRIYLAEEIKTENPKMLENIKALMPETPITFMPHSDMKQDLNNCHAFVRTGEMTPY
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCH
SNIILESGVVF
HHHHHCCCCCC
>Mature Secondary Structure
MKKTKMINSDMSRVIAQMGHFDKLSIGDAGMPVPMGIEKIDLAVDNGIPSFMQVLTNVLE
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
ELEVQRIYLAEEIKTENPKMLENIKALMPETPITFMPHSDMKQDLNNCHAFVRTGEMTPY
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCH
SNIILESGVVF
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA