| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is tarF [H]
Identifier: 116492874
GI number: 116492874
Start: 1110013
End: 1111224
Strand: Reverse
Name: tarF [H]
Synonym: PEPE_1112
Alternate gene names: 116492874
Gene position: 1111224-1110013 (Counterclockwise)
Preceding gene: 116492875
Following gene: 116492873
Centisome position: 60.64
GC content: 33.0
Gene sequence:
>1212_bases ATGAGTAATTTAAAAAAACAACTAAAAATTATCATTCGCTACGTATTGATTGTTATCAACGATATTTTAACTTTATTACC CATTAAAAAAGGAGTAGTTTTATTTGAAAGTTTTAATGGTAAGGGATTAACCGATAACCCTAAGGCAATTTACGATCAGC TTTTGGAGATGGATAATCAAACTGCTAAACTACTTTATTGGGGAATTAAAGGTCAATTTTATGATGAAATTGTACAACAA TATCCGAATGCTCAAATCTTAAAAAGATGGTCATTAAAATGGATTTGGATTTCAGCAAGAGCAAATTATTGGATTTTTAA TTCAAGAATGCCCACTTGGTGGAAGAAAAATCGAAATACTAAATACGTTCAAACATGGCATGGTACACCTTTAAAACATT TAGCGACAGACATGGATCAGGTGAAATTACCCGGAAGCACGCGAGAAAAGTACTTAAAAGAATTTGTTAGTGAAGCTAAA CGATGGGACTACCTAGTAGCTGCAAACCAATATTCAGAGGATATTTTCAAACGAGCTTTTCGATTCAAAAACCAATTTCT AGAAACGGGTTATCCGCGTAATGATATATTAGTTCAAAAAAATCAACCAACTGAGATTAAGGCACTAAAGCAAAAAATCA TTGGCAATGGAGAAAAAAGAGTCGTGACATATGCGCCAACATGGCGAGAAGATGATTTTATCAGTGTTGGACATTATCAT TTTAGATGGCATTTTAGTCTAAAAAAAATGATGGGATTACTTCCTGAAGATGTGATGTTATTAATTCGACCACATTACCT TGTAACAGATCGAATTGATATTAAGGGATTTGAAGATCGCGTAGTTATTGATTCAACAACTGATATGAATGAAATTTATC TGATTACAGATTTAATGGTGACGGATTATTCATCTGTAATGTTTGATTTTGCTATTTTAAAACGACCAATGTTATTTTTT GCGTATGACTTGGAATATTACCGAGATGATTTGAGAGGGTTTTATTTTGATTATTATACTGAGCTACCAGGTTCCATTGT TACCGATGAAACACATTTATTAGCTGAAATTGATCAACTTCTTCAAAATAATTTTGCGGAGCTTGATCCAGAGCGCTTTA ACAAATTTGCCAAGCGTTTTGTAAGTTGGGAAAGAGGGACAGCTGCTCAACAAGTCATAGAAAAAATTAACTATCGGAGG GATGAAAAATGA
Upstream 100 bases:
>100_bases GATAAGAATGTGATTCATAAATTAAATCAACAATGGAATACATTGAATGATGGTCATTCTAGTGCCCGATTAATTAAGCA AGTTAAAGAGAGATGTACAG
Downstream 100 bases:
>100_bases TTATTGGTTCACACGTCAGTATGAGTGGAAGGAAAATGTTTTTAGGCTCCGTTGAAACGAGTATTGAAAATGGGGCAAAT GCTTTGATGATTTATACAGG
Product: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 403; Mature: 402
Protein sequence:
>403_residues MSNLKKQLKIIIRYVLIVINDILTLLPIKKGVVLFESFNGKGLTDNPKAIYDQLLEMDNQTAKLLYWGIKGQFYDEIVQQ YPNAQILKRWSLKWIWISARANYWIFNSRMPTWWKKNRNTKYVQTWHGTPLKHLATDMDQVKLPGSTREKYLKEFVSEAK RWDYLVAANQYSEDIFKRAFRFKNQFLETGYPRNDILVQKNQPTEIKALKQKIIGNGEKRVVTYAPTWREDDFISVGHYH FRWHFSLKKMMGLLPEDVMLLIRPHYLVTDRIDIKGFEDRVVIDSTTDMNEIYLITDLMVTDYSSVMFDFAILKRPMLFF AYDLEYYRDDLRGFYFDYYTELPGSIVTDETHLLAEIDQLLQNNFAELDPERFNKFAKRFVSWERGTAAQQVIEKINYRR DEK
Sequences:
>Translated_403_residues MSNLKKQLKIIIRYVLIVINDILTLLPIKKGVVLFESFNGKGLTDNPKAIYDQLLEMDNQTAKLLYWGIKGQFYDEIVQQ YPNAQILKRWSLKWIWISARANYWIFNSRMPTWWKKNRNTKYVQTWHGTPLKHLATDMDQVKLPGSTREKYLKEFVSEAK RWDYLVAANQYSEDIFKRAFRFKNQFLETGYPRNDILVQKNQPTEIKALKQKIIGNGEKRVVTYAPTWREDDFISVGHYH FRWHFSLKKMMGLLPEDVMLLIRPHYLVTDRIDIKGFEDRVVIDSTTDMNEIYLITDLMVTDYSSVMFDFAILKRPMLFF AYDLEYYRDDLRGFYFDYYTELPGSIVTDETHLLAEIDQLLQNNFAELDPERFNKFAKRFVSWERGTAAQQVIEKINYRR DEK >Mature_402_residues SNLKKQLKIIIRYVLIVINDILTLLPIKKGVVLFESFNGKGLTDNPKAIYDQLLEMDNQTAKLLYWGIKGQFYDEIVQQY PNAQILKRWSLKWIWISARANYWIFNSRMPTWWKKNRNTKYVQTWHGTPLKHLATDMDQVKLPGSTREKYLKEFVSEAKR WDYLVAANQYSEDIFKRAFRFKNQFLETGYPRNDILVQKNQPTEIKALKQKIIGNGEKRVVTYAPTWREDDFISVGHYHF RWHFSLKKMMGLLPEDVMLLIRPHYLVTDRIDIKGFEDRVVIDSTTDMNEIYLITDLMVTDYSSVMFDFAILKRPMLFFA YDLEYYRDDLRGFYFDYYTELPGSIVTDETHLLAEIDQLLQNNFAELDPERFNKFAKRFVSWERGTAAQQVIEKINYRRD EK
Specific function: Catalyzes the addition of a second single glycerol-P residue to the prenolpyrophosphate-linked dissacharide, to complete the linkage unit (Potential) [H]
COG id: COG1887
COG function: function code M; Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDP-glycerol glycerophosphotransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007554 [H]
Pfam domain/function: PF04464 Glyphos_transf [H]
EC number: NA
Molecular weight: Translated: 48165; Mature: 48034
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNLKKQLKIIIRYVLIVINDILTLLPIKKGVVLFESFNGKGLTDNPKAIYDQLLEMDNQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCC TAKLLYWGIKGQFYDEIVQQYPNAQILKRWSLKWIWISARANYWIFNSRMPTWWKKNRNT EEEEEEEECCCHHHHHHHHHCCCHHHHHHCCEEEEEEEECCCEEEEECCCCCHHHCCCCC KYVQTWHGTPLKHLATDMDQVKLPGSTREKYLKEFVSEAKRWDYLVAANQYSEDIFKRAF CEEEEECCCCHHHHHCCHHHEECCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHH RFKNQFLETGYPRNDILVQKNQPTEIKALKQKIIGNGEKRVVTYAPTWREDDFISVGHYH HHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCEE FRWHFSLKKMMGLLPEDVMLLIRPHYLVTDRIDIKGFEDRVVIDSTTDMNEIYLITDLMV EEEEEEHHHHHCCCCHHHHHEECCCEEEECCEECCCCCCEEEEECCCCCCEEEEEEHHHH TDYSSVMFDFAILKRPMLFFAYDLEYYRDDLRGFYFDYYTELPGSIVTDETHLLAEIDQL HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHH LQNNFAELDPERFNKFAKRFVSWERGTAAQQVIEKINYRRDEK HHCCHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure SNLKKQLKIIIRYVLIVINDILTLLPIKKGVVLFESFNGKGLTDNPKAIYDQLLEMDNQ CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCC TAKLLYWGIKGQFYDEIVQQYPNAQILKRWSLKWIWISARANYWIFNSRMPTWWKKNRNT EEEEEEEECCCHHHHHHHHHCCCHHHHHHCCEEEEEEEECCCEEEEECCCCCHHHCCCCC KYVQTWHGTPLKHLATDMDQVKLPGSTREKYLKEFVSEAKRWDYLVAANQYSEDIFKRAF CEEEEECCCCHHHHHCCHHHEECCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHH RFKNQFLETGYPRNDILVQKNQPTEIKALKQKIIGNGEKRVVTYAPTWREDDFISVGHYH HHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCEE FRWHFSLKKMMGLLPEDVMLLIRPHYLVTDRIDIKGFEDRVVIDSTTDMNEIYLITDLMV EEEEEEHHHHHCCCCHHHHHEECCCEEEECCEECCCCCCEEEEECCCCCCEEEEEEHHHH TDYSSVMFDFAILKRPMLFFAYDLEYYRDDLRGFYFDYYTELPGSIVTDETHLLAEIDQL HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHH LQNNFAELDPERFNKFAKRFVSWERGTAAQQVIEKINYRRDEK HHCCHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11882717 [H]