The gene/protein map for NC_008525 is currently unavailable.
Definition Pediococcus pentosaceus ATCC 25745, complete genome.
Accession NC_008525
Length 1,832,387

Click here to switch to the map view.

The map label for this gene is tarF [H]

Identifier: 116492874

GI number: 116492874

Start: 1110013

End: 1111224

Strand: Reverse

Name: tarF [H]

Synonym: PEPE_1112

Alternate gene names: 116492874

Gene position: 1111224-1110013 (Counterclockwise)

Preceding gene: 116492875

Following gene: 116492873

Centisome position: 60.64

GC content: 33.0

Gene sequence:

>1212_bases
ATGAGTAATTTAAAAAAACAACTAAAAATTATCATTCGCTACGTATTGATTGTTATCAACGATATTTTAACTTTATTACC
CATTAAAAAAGGAGTAGTTTTATTTGAAAGTTTTAATGGTAAGGGATTAACCGATAACCCTAAGGCAATTTACGATCAGC
TTTTGGAGATGGATAATCAAACTGCTAAACTACTTTATTGGGGAATTAAAGGTCAATTTTATGATGAAATTGTACAACAA
TATCCGAATGCTCAAATCTTAAAAAGATGGTCATTAAAATGGATTTGGATTTCAGCAAGAGCAAATTATTGGATTTTTAA
TTCAAGAATGCCCACTTGGTGGAAGAAAAATCGAAATACTAAATACGTTCAAACATGGCATGGTACACCTTTAAAACATT
TAGCGACAGACATGGATCAGGTGAAATTACCCGGAAGCACGCGAGAAAAGTACTTAAAAGAATTTGTTAGTGAAGCTAAA
CGATGGGACTACCTAGTAGCTGCAAACCAATATTCAGAGGATATTTTCAAACGAGCTTTTCGATTCAAAAACCAATTTCT
AGAAACGGGTTATCCGCGTAATGATATATTAGTTCAAAAAAATCAACCAACTGAGATTAAGGCACTAAAGCAAAAAATCA
TTGGCAATGGAGAAAAAAGAGTCGTGACATATGCGCCAACATGGCGAGAAGATGATTTTATCAGTGTTGGACATTATCAT
TTTAGATGGCATTTTAGTCTAAAAAAAATGATGGGATTACTTCCTGAAGATGTGATGTTATTAATTCGACCACATTACCT
TGTAACAGATCGAATTGATATTAAGGGATTTGAAGATCGCGTAGTTATTGATTCAACAACTGATATGAATGAAATTTATC
TGATTACAGATTTAATGGTGACGGATTATTCATCTGTAATGTTTGATTTTGCTATTTTAAAACGACCAATGTTATTTTTT
GCGTATGACTTGGAATATTACCGAGATGATTTGAGAGGGTTTTATTTTGATTATTATACTGAGCTACCAGGTTCCATTGT
TACCGATGAAACACATTTATTAGCTGAAATTGATCAACTTCTTCAAAATAATTTTGCGGAGCTTGATCCAGAGCGCTTTA
ACAAATTTGCCAAGCGTTTTGTAAGTTGGGAAAGAGGGACAGCTGCTCAACAAGTCATAGAAAAAATTAACTATCGGAGG
GATGAAAAATGA

Upstream 100 bases:

>100_bases
GATAAGAATGTGATTCATAAATTAAATCAACAATGGAATACATTGAATGATGGTCATTCTAGTGCCCGATTAATTAAGCA
AGTTAAAGAGAGATGTACAG

Downstream 100 bases:

>100_bases
TTATTGGTTCACACGTCAGTATGAGTGGAAGGAAAATGTTTTTAGGCTCCGTTGAAACGAGTATTGAAAATGGGGCAAAT
GCTTTGATGATTTATACAGG

Product: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MSNLKKQLKIIIRYVLIVINDILTLLPIKKGVVLFESFNGKGLTDNPKAIYDQLLEMDNQTAKLLYWGIKGQFYDEIVQQ
YPNAQILKRWSLKWIWISARANYWIFNSRMPTWWKKNRNTKYVQTWHGTPLKHLATDMDQVKLPGSTREKYLKEFVSEAK
RWDYLVAANQYSEDIFKRAFRFKNQFLETGYPRNDILVQKNQPTEIKALKQKIIGNGEKRVVTYAPTWREDDFISVGHYH
FRWHFSLKKMMGLLPEDVMLLIRPHYLVTDRIDIKGFEDRVVIDSTTDMNEIYLITDLMVTDYSSVMFDFAILKRPMLFF
AYDLEYYRDDLRGFYFDYYTELPGSIVTDETHLLAEIDQLLQNNFAELDPERFNKFAKRFVSWERGTAAQQVIEKINYRR
DEK

Sequences:

>Translated_403_residues
MSNLKKQLKIIIRYVLIVINDILTLLPIKKGVVLFESFNGKGLTDNPKAIYDQLLEMDNQTAKLLYWGIKGQFYDEIVQQ
YPNAQILKRWSLKWIWISARANYWIFNSRMPTWWKKNRNTKYVQTWHGTPLKHLATDMDQVKLPGSTREKYLKEFVSEAK
RWDYLVAANQYSEDIFKRAFRFKNQFLETGYPRNDILVQKNQPTEIKALKQKIIGNGEKRVVTYAPTWREDDFISVGHYH
FRWHFSLKKMMGLLPEDVMLLIRPHYLVTDRIDIKGFEDRVVIDSTTDMNEIYLITDLMVTDYSSVMFDFAILKRPMLFF
AYDLEYYRDDLRGFYFDYYTELPGSIVTDETHLLAEIDQLLQNNFAELDPERFNKFAKRFVSWERGTAAQQVIEKINYRR
DEK
>Mature_402_residues
SNLKKQLKIIIRYVLIVINDILTLLPIKKGVVLFESFNGKGLTDNPKAIYDQLLEMDNQTAKLLYWGIKGQFYDEIVQQY
PNAQILKRWSLKWIWISARANYWIFNSRMPTWWKKNRNTKYVQTWHGTPLKHLATDMDQVKLPGSTREKYLKEFVSEAKR
WDYLVAANQYSEDIFKRAFRFKNQFLETGYPRNDILVQKNQPTEIKALKQKIIGNGEKRVVTYAPTWREDDFISVGHYHF
RWHFSLKKMMGLLPEDVMLLIRPHYLVTDRIDIKGFEDRVVIDSTTDMNEIYLITDLMVTDYSSVMFDFAILKRPMLFFA
YDLEYYRDDLRGFYFDYYTELPGSIVTDETHLLAEIDQLLQNNFAELDPERFNKFAKRFVSWERGTAAQQVIEKINYRRD
EK

Specific function: Catalyzes the addition of a second single glycerol-P residue to the prenolpyrophosphate-linked dissacharide, to complete the linkage unit (Potential) [H]

COG id: COG1887

COG function: function code M; Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CDP-glycerol glycerophosphotransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007554 [H]

Pfam domain/function: PF04464 Glyphos_transf [H]

EC number: NA

Molecular weight: Translated: 48165; Mature: 48034

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLKKQLKIIIRYVLIVINDILTLLPIKKGVVLFESFNGKGLTDNPKAIYDQLLEMDNQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCC
TAKLLYWGIKGQFYDEIVQQYPNAQILKRWSLKWIWISARANYWIFNSRMPTWWKKNRNT
EEEEEEEECCCHHHHHHHHHCCCHHHHHHCCEEEEEEEECCCEEEEECCCCCHHHCCCCC
KYVQTWHGTPLKHLATDMDQVKLPGSTREKYLKEFVSEAKRWDYLVAANQYSEDIFKRAF
CEEEEECCCCHHHHHCCHHHEECCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHH
RFKNQFLETGYPRNDILVQKNQPTEIKALKQKIIGNGEKRVVTYAPTWREDDFISVGHYH
HHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCEE
FRWHFSLKKMMGLLPEDVMLLIRPHYLVTDRIDIKGFEDRVVIDSTTDMNEIYLITDLMV
EEEEEEHHHHHCCCCHHHHHEECCCEEEECCEECCCCCCEEEEECCCCCCEEEEEEHHHH
TDYSSVMFDFAILKRPMLFFAYDLEYYRDDLRGFYFDYYTELPGSIVTDETHLLAEIDQL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHH
LQNNFAELDPERFNKFAKRFVSWERGTAAQQVIEKINYRRDEK
HHCCHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SNLKKQLKIIIRYVLIVINDILTLLPIKKGVVLFESFNGKGLTDNPKAIYDQLLEMDNQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCC
TAKLLYWGIKGQFYDEIVQQYPNAQILKRWSLKWIWISARANYWIFNSRMPTWWKKNRNT
EEEEEEEECCCHHHHHHHHHCCCHHHHHHCCEEEEEEEECCCEEEEECCCCCHHHCCCCC
KYVQTWHGTPLKHLATDMDQVKLPGSTREKYLKEFVSEAKRWDYLVAANQYSEDIFKRAF
CEEEEECCCCHHHHHCCHHHEECCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHH
RFKNQFLETGYPRNDILVQKNQPTEIKALKQKIIGNGEKRVVTYAPTWREDDFISVGHYH
HHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCEE
FRWHFSLKKMMGLLPEDVMLLIRPHYLVTDRIDIKGFEDRVVIDSTTDMNEIYLITDLMV
EEEEEEHHHHHCCCCHHHHHEECCCEEEECCEECCCCCCEEEEECCCCCCEEEEEEHHHH
TDYSSVMFDFAILKRPMLFFAYDLEYYRDDLRGFYFDYYTELPGSIVTDETHLLAEIDQL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHH
LQNNFAELDPERFNKFAKRFVSWERGTAAQQVIEKINYRRDEK
HHCCHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11882717 [H]