| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492736
Identifier: 116492736
GI number: 116492736
Start: 979053
End: 980387
Strand: Reverse
Name: 116492736
Synonym: PEPE_0973
Alternate gene names: NA
Gene position: 980387-979053 (Counterclockwise)
Preceding gene: 116492737
Following gene: 116492735
Centisome position: 53.5
GC content: 25.99
Gene sequence:
>1335_bases ATGAAGGCTTATTTTAAAACGGTACATGATATTACGAAAATAGATATAGGGGAAATCGACATATATTTTAGTCTTGGAGA TATAGTCGTAGAGTCAAAATATAATGAGAAACATGGAACAAAAGAAATTGAGATTAGAGGAATTTTAGATTTTAATCCTA TATATTCAAATTTAGATTTAAGAAGATTAATTAGGCCCGAATTATTAATAATACAGGGAGTAATTTCACTTTTCATTGAT TTTCCTATTACTGTTTATGACATTACAAGTCAAATTCAATCCTTTACTGATATTGAAAATTTTGTTGAAAATAAATTCAA AAAATCTACTTTTAAAATTGAGAAAAAGGATTATTCGAATGAGCTGGAGTTAGTTTTAGAAAGAATAGAAGATCCTAAAA ATAAAAATTTAGCGGTTTCAGTCCTTGATAGATGGCGAAAAGTTCTCGATTTTAGAAAGGAGGATATGTTTGAAAAACTT TATCGTGATGAAGAATTACTTGGAATATTTCATATTTTAGATTTGCTTAGTGATATATATGTTGACGATAATACGAAGAT TATTGTCCAGAGTTTAGGTGCGAATAGCCCAAATTTTAGTACTAAAATTAAATATCTACTTTCAAAAGAAGGAATAACCT CGGAAGAGGAATTTGACTTTGTTGGAGTAGCAATAAAATGTAGAAATGCTATAGCACATGATAGAGTTGTATTTCAACCT GTAGTCAACTGGCCTTTAGCTCCTTTTTTTAATATTTCAGAAAGTTTTATAGATGTAGATATATTACGTTGCTTAACAAA AAAATTAATCGGAAATTTTTTTGGAATTAATATTTGGGATAATGAATATAATGAATTTGCGATAAAATATCTACGACCAT CTGTTAAAAATATTTGTGAATTTATAAAAAAACCTAGTAAATATGAGATAATATCCATTGATGATATGGACATACTGAAT GAGAAAAAACATGTAATAACTTGGGAAAGTGTTTACATAAGATATCTTCAAAATCCCAAAAAGATAAAGATAGACAAGCT AGGTAGTGCTTTGAAATCGAGTTTTTTTAATTTAGAATTGAATAGTAAAAATGCGTATAATATTTTCAATATTTCTGTAA TATTGATAGAGTCTAATGATTCTGAAATTGTCGATAGATGTAGAGAAAATATTGAATGTTTATTAGAAAAAGAATTAATA GAAAATAATGATTTGTATGAAATAATACCTGAATTTGATCTTCACCACGTTAATTATATAAAATATAAAGAAATTGTTCT TAATAAGGTTAGGAATAATAATACGTATTTTAATTTAAATGATAGTATGTACTAA
Upstream 100 bases:
>100_bases GCTATCAAAGCATCTAATTAATATAGTAATTAGTTTGTTTTTTAGATTGATAAAACAACAATGTGGATTACGAGTTTGAT TTAAGGAGAGTTCACTTATC
Downstream 100 bases:
>100_bases ATTAGAAAAGACTACGAATAATTTTTTGAATGTTAACGGTTAATATGACAGCTAAGTCAATAAATATTGATGAAGACAAT TGAAGAAAAACAATTCATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 444; Mature: 444
Protein sequence:
>444_residues MKAYFKTVHDITKIDIGEIDIYFSLGDIVVESKYNEKHGTKEIEIRGILDFNPIYSNLDLRRLIRPELLIIQGVISLFID FPITVYDITSQIQSFTDIENFVENKFKKSTFKIEKKDYSNELELVLERIEDPKNKNLAVSVLDRWRKVLDFRKEDMFEKL YRDEELLGIFHILDLLSDIYVDDNTKIIVQSLGANSPNFSTKIKYLLSKEGITSEEEFDFVGVAIKCRNAIAHDRVVFQP VVNWPLAPFFNISESFIDVDILRCLTKKLIGNFFGINIWDNEYNEFAIKYLRPSVKNICEFIKKPSKYEIISIDDMDILN EKKHVITWESVYIRYLQNPKKIKIDKLGSALKSSFFNLELNSKNAYNIFNISVILIESNDSEIVDRCRENIECLLEKELI ENNDLYEIIPEFDLHHVNYIKYKEIVLNKVRNNNTYFNLNDSMY
Sequences:
>Translated_444_residues MKAYFKTVHDITKIDIGEIDIYFSLGDIVVESKYNEKHGTKEIEIRGILDFNPIYSNLDLRRLIRPELLIIQGVISLFID FPITVYDITSQIQSFTDIENFVENKFKKSTFKIEKKDYSNELELVLERIEDPKNKNLAVSVLDRWRKVLDFRKEDMFEKL YRDEELLGIFHILDLLSDIYVDDNTKIIVQSLGANSPNFSTKIKYLLSKEGITSEEEFDFVGVAIKCRNAIAHDRVVFQP VVNWPLAPFFNISESFIDVDILRCLTKKLIGNFFGINIWDNEYNEFAIKYLRPSVKNICEFIKKPSKYEIISIDDMDILN EKKHVITWESVYIRYLQNPKKIKIDKLGSALKSSFFNLELNSKNAYNIFNISVILIESNDSEIVDRCRENIECLLEKELI ENNDLYEIIPEFDLHHVNYIKYKEIVLNKVRNNNTYFNLNDSMY >Mature_444_residues MKAYFKTVHDITKIDIGEIDIYFSLGDIVVESKYNEKHGTKEIEIRGILDFNPIYSNLDLRRLIRPELLIIQGVISLFID FPITVYDITSQIQSFTDIENFVENKFKKSTFKIEKKDYSNELELVLERIEDPKNKNLAVSVLDRWRKVLDFRKEDMFEKL YRDEELLGIFHILDLLSDIYVDDNTKIIVQSLGANSPNFSTKIKYLLSKEGITSEEEFDFVGVAIKCRNAIAHDRVVFQP VVNWPLAPFFNISESFIDVDILRCLTKKLIGNFFGINIWDNEYNEFAIKYLRPSVKNICEFIKKPSKYEIISIDDMDILN EKKHVITWESVYIRYLQNPKKIKIDKLGSALKSSFFNLELNSKNAYNIFNISVILIESNDSEIVDRCRENIECLLEKELI ENNDLYEIIPEFDLHHVNYIKYKEIVLNKVRNNNTYFNLNDSMY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52276; Mature: 52276
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAYFKTVHDITKIDIGEIDIYFSLGDIVVESKYNEKHGTKEIEIRGILDFNPIYSNLDL CCCHHHHHHHHHCCCCCCEEEEEEECCEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCH RRLIRPELLIIQGVISLFIDFPITVYDITSQIQSFTDIENFVENKFKKSTFKIEKKDYSN HHHHCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHCCCH ELELVLERIEDPKNKNLAVSVLDRWRKVLDFRKEDMFEKLYRDEELLGIFHILDLLSDIY HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHE VDDNTKIIVQSLGANSPNFSTKIKYLLSKEGITSEEEFDFVGVAIKCRNAIAHDRVVFQP ECCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEHHHHHCCCEEEEH VVNWPLAPFFNISESFIDVDILRCLTKKLIGNFFGINIWDNEYNEFAIKYLRPSVKNICE HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHCHHHHHHHH FIKKPSKYEIISIDDMDILNEKKHVITWESVYIRYLQNPKKIKIDKLGSALKSSFFNLEL HHCCCCCEEEEEECCCHHHCCCCEEEEHHHHHHHHHCCCCEEEHHHHHHHHHHCEEEEEE NSKNAYNIFNISVILIESNDSEIVDRCRENIECLLEKELIENNDLYEIIPEFDLHHVNYI CCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHH KYKEIVLNKVRNNNTYFNLNDSMY HHHHHHHHHHCCCCCEEEECCCCC >Mature Secondary Structure MKAYFKTVHDITKIDIGEIDIYFSLGDIVVESKYNEKHGTKEIEIRGILDFNPIYSNLDL CCCHHHHHHHHHCCCCCCEEEEEEECCEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCH RRLIRPELLIIQGVISLFIDFPITVYDITSQIQSFTDIENFVENKFKKSTFKIEKKDYSN HHHHCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHCCCH ELELVLERIEDPKNKNLAVSVLDRWRKVLDFRKEDMFEKLYRDEELLGIFHILDLLSDIY HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHE VDDNTKIIVQSLGANSPNFSTKIKYLLSKEGITSEEEFDFVGVAIKCRNAIAHDRVVFQP ECCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEHHHHHCCCEEEEH VVNWPLAPFFNISESFIDVDILRCLTKKLIGNFFGINIWDNEYNEFAIKYLRPSVKNICE HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHCHHHHHHHH FIKKPSKYEIISIDDMDILNEKKHVITWESVYIRYLQNPKKIKIDKLGSALKSSFFNLEL HHCCCCCEEEEEECCCHHHCCCCEEEEHHHHHHHHHCCCCEEEHHHHHHHHHHCEEEEEE NSKNAYNIFNISVILIESNDSEIVDRCRENIECLLEKELIENNDLYEIIPEFDLHHVNYI CCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHH KYKEIVLNKVRNNNTYFNLNDSMY HHHHHHHHHHCCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA