Click here to switch to the map view.

The map label for this gene is rbgA [H]

Identifier: 116492735

GI number: 116492735

Start: 977394

End: 978257

Strand: Reverse

Name: rbgA [H]

Synonym: PEPE_0972

Alternate gene names: 116492735

Gene position: 978257-977394 (Counterclockwise)

Preceding gene: 116492736

Following gene: 116492734

Centisome position: 53.39

GC content: 38.77

Gene sequence:

>864_bases
ATGGCAATTATCCAATGGTACCCTGGCCATATGGCGAAGGCAATTCGTCAGGTCGAAGAAAAATTAAAACTAGTTGATAT
CGTATTTGAACTAGTAGACGCACGGATCCCAGTGTCGTCACGAAATCCAATGATTGAAGACGTTATCAAAAGCAAACCTC
ATCTTTTAATCTTAACGAAGGCTGATTTAGCAGATCCTAAAGAAACTAAAAAATGGCTAGATTATTATAAATCACGGAAC
GAATACGCCATCGCATTGAATTCTAAAGAGCCCTCAACTGAAAATATCATTTTGAAGAAAACGCAAGAAATTTTAGCCGA
CAAGCTAGCTAACAAGGCTGATCGTGGAATTAAAAATGCTGAAATTCGGTCCATGTGTATTGGAATCCCCAACGTTGGTA
AATCTACGTTGCTTAACCACTTAGTTAATAAGAAGGTGGCGATTACAGGTGACCGCCCCGGGGTAACGAAAAAACAACAA
TGGTTGCGTTCACGTCGCGGACTATATCTTTTAGATACTCCCGGAATTTTATGGCCTAAATTTGAAGACCAAAATGTAGG
AAATAAATTGGCCTTTACTGGAGCGATTAAAGATAATTTATTCGCTAACGACGATGTTGTAATCTATGGTCTAAATATAT
TCATCAACCATTATCGTGAAGGATTGATGGGGCGTTATCATTTAACAGAAGACGATTTAGAAATGGAATTACCTGAATTG
TTACTACTAATTACTCAAAAATTAGGGATGCGTGACGACTACGATCGTGCTAGTCAGCGAATCTTGTTAGACGCACGTAA
AGGAAAACTGGGTCGTTTCACTTTAGACTTTGTAGAGGAGTTTGAAGACCTTGGCGACGATTAA

Upstream 100 bases:

>100_bases
GTAAATAATGCTAAAATAGAGATTACTAGTTAATATTAAACTAGTCTAATCAATCAAAAAAATGGCATAAAAAGCCCAAC
GAAATAGGAGTTAAACAAAC

Downstream 100 bases:

>100_bases
GGAAATTAAGACGCAGCTTTTAAGTGTTTATACACTAGATGACCCGTTATTAGTTGAACTTTCAGAAGATCCACGAACTG
GTGTTCAACGCTTAATTAAA

Product: GTP-binding protein YlqF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MAIIQWYPGHMAKAIRQVEEKLKLVDIVFELVDARIPVSSRNPMIEDVIKSKPHLLILTKADLADPKETKKWLDYYKSRN
EYAIALNSKEPSTENIILKKTQEILADKLANKADRGIKNAEIRSMCIGIPNVGKSTLLNHLVNKKVAITGDRPGVTKKQQ
WLRSRRGLYLLDTPGILWPKFEDQNVGNKLAFTGAIKDNLFANDDVVIYGLNIFINHYREGLMGRYHLTEDDLEMELPEL
LLLITQKLGMRDDYDRASQRILLDARKGKLGRFTLDFVEEFEDLGDD

Sequences:

>Translated_287_residues
MAIIQWYPGHMAKAIRQVEEKLKLVDIVFELVDARIPVSSRNPMIEDVIKSKPHLLILTKADLADPKETKKWLDYYKSRN
EYAIALNSKEPSTENIILKKTQEILADKLANKADRGIKNAEIRSMCIGIPNVGKSTLLNHLVNKKVAITGDRPGVTKKQQ
WLRSRRGLYLLDTPGILWPKFEDQNVGNKLAFTGAIKDNLFANDDVVIYGLNIFINHYREGLMGRYHLTEDDLEMELPEL
LLLITQKLGMRDDYDRASQRILLDARKGKLGRFTLDFVEEFEDLGDD
>Mature_286_residues
AIIQWYPGHMAKAIRQVEEKLKLVDIVFELVDARIPVSSRNPMIEDVIKSKPHLLILTKADLADPKETKKWLDYYKSRNE
YAIALNSKEPSTENIILKKTQEILADKLANKADRGIKNAEIRSMCIGIPNVGKSTLLNHLVNKKVAITGDRPGVTKKQQW
LRSRRGLYLLDTPGILWPKFEDQNVGNKLAFTGAIKDNLFANDDVVIYGLNIFINHYREGLMGRYHLTEDDLEMELPELL
LLITQKLGMRDDYDRASQRILLDARKGKLGRFTLDFVEEFEDLGDD

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=299, Percent_Identity=33.1103678929766, Blast_Score=152, Evalue=4e-37,
Organism=Homo sapiens, GI296317324, Length=173, Percent_Identity=30.635838150289, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI9506611, Length=173, Percent_Identity=30.635838150289, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI7019419, Length=162, Percent_Identity=32.0987654320988, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193211047, Length=311, Percent_Identity=29.2604501607717, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17534827, Length=277, Percent_Identity=29.9638989169675, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI25143545, Length=178, Percent_Identity=29.2134831460674, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71982363, Length=178, Percent_Identity=29.2134831460674, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI115535155, Length=178, Percent_Identity=29.2134831460674, Blast_Score=72, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6323744, Length=237, Percent_Identity=30.8016877637131, Blast_Score=79, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6324381, Length=262, Percent_Identity=25.5725190839695, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6320842, Length=168, Percent_Identity=29.7619047619048, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI85815858, Length=235, Percent_Identity=34.0425531914894, Blast_Score=130, Evalue=1e-30,
Organism=Drosophila melanogaster, GI28572990, Length=175, Percent_Identity=29.7142857142857, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI19922460, Length=255, Percent_Identity=27.0588235294118, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32877; Mature: 32745

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIIQWYPGHMAKAIRQVEEKLKLVDIVFELVDARIPVSSRNPMIEDVIKSKPHLLILTK
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEEEEEC
ADLADPKETKKWLDYYKSRNEYAIALNSKEPSTENIILKKTQEILADKLANKADRGIKNA
CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
EIRSMCIGIPNVGKSTLLNHLVNKKVAITGDRPGVTKKQQWLRSRRGLYLLDTPGILWPK
HHHHHEECCCCCCHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHCCEEEEECCCCCCCC
FEDQNVGNKLAFTGAIKDNLFANDDVVIYGLNIFINHYREGLMGRYHLTEDDLEMELPEL
CCCCCCCCEEEEEECHHCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LLLITQKLGMRDDYDRASQRILLDARKGKLGRFTLDFVEEFEDLGDD
HHHHHHHHCCCCCHHHHHHEEEEECCCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
AIIQWYPGHMAKAIRQVEEKLKLVDIVFELVDARIPVSSRNPMIEDVIKSKPHLLILTK
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEEEEEC
ADLADPKETKKWLDYYKSRNEYAIALNSKEPSTENIILKKTQEILADKLANKADRGIKNA
CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
EIRSMCIGIPNVGKSTLLNHLVNKKVAITGDRPGVTKKQQWLRSRRGLYLLDTPGILWPK
HHHHHEECCCCCCHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHCCEEEEECCCCCCCC
FEDQNVGNKLAFTGAIKDNLFANDDVVIYGLNIFINHYREGLMGRYHLTEDDLEMELPEL
CCCCCCCCEEEEEECHHCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LLLITQKLGMRDDYDRASQRILLDARKGKLGRFTLDFVEEFEDLGDD
HHHHHHHHCCCCCHHHHHHEEEEECCCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]